Browse Element(s) Details


Os.17169.1.S1_at

Description gb:AK069430.1
DB_XREF= gi:32979454
TID=Os.17169.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019A14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019A14, full insert sequence.
FL= gb:AK069430.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g143002/11ubiquitin-conjugating enzyme E2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14270Os.23847.1.S1_at11/115+7993622..7996781expressed protein
LOC_Os05g14280OsAffx.14687.1.S1_at11/115+7997274..8000020hypothetical protein
LOC_Os05g14290OsAffx.26879.1.S1_at11/115+8006476..8008441hypothetical protein
LOC_Os05g14290Os.39942.2.S1_a_at1/115+8006476..8008441hypothetical protein
LOC_Os05g14290Os.39942.2.S1_x_at1/115+8006476..8008441hypothetical protein
LOC_Os05g14290Os.39942.1.S1_x_at1/115+8006476..8008441hypothetical protein
LOC_Os05g14300Os.17169.1.S1_at2/115+8013425..8018706ubiquitin-conjugating enzyme E2, putative, expressed
LOC_Os05g14310Os.55319.1.S1_at11/115+8026103..8026901expressed protein
LOC_Os05g14320Os.40626.2.S1_x_at9/115+8032834..8037237transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g14320Os.40626.1.S1_at7/115+8032834..8037237transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g14330Os.18412.1.S1_a_at1/115+8038722..8043362retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17169.1.S1_at--1112--7871Chr05:8018503..8018527 (25 bp)
GGTTTTGCTTGCCTAACTATAGAAG
LOC_Os05g14300
Os.17169.1.S1_at--586--1251Chr05:8018536..8018560 (25 bp)
AGATAGTCCATTCTCGTTTTTCTCC
LOC_Os05g14300
Os.17169.1.S1_at--422--10451NONE
TTAGCTTGCATTTAGGTTACACCCG
NONE
Os.17169.1.S1_at--896--6751NONE
GTTACACCCGTTGTTACTTGCAAGA
NONE
Os.17169.1.S1_at--475--2791NONE
AAGAGTGTTCTCCATCGGCTAGCGT
NONE
Os.17169.1.S1_at--158--211Chr05:8018795..8018819 (25 bp)
ATTTGCCCTTTTTCTTGTGAGTTCA
NONE
Os.17169.1.S1_at--715--10371NONE
TTTTTTGCAGCTAACACTTGCGTTA
NONE
Os.17169.1.S1_at--899--6051Chr05:8018884..8018908 (25 bp)
GAGTTGACATTTATCTTCTCGGAAA
NONE
Os.17169.1.S1_at--921--3211Chr05:8018925..8018949 (25 bp)
CAAGGTCGAATTACATCCGTCAGTA
NONE
Os.17169.1.S1_at--671--10731NONE
TTGAACCATTTGTGCGATTTATCGT
NONE
Os.17169.1.S1_at--786--4631Chr05:8018990..8019014 (25 bp)
GCGATTTATCGTGGCTAGACTTTTT
NONE
Target Sequence 
GGTTTTGCTTGCCTAACTATAGAAGTGCTGTGTAGATAGTCCATTCTCGTTTTTCTCCTTTTGTTGTACAGGTTGAGTGT
GTGGACTTAAAAAATTTAAATGATCATGTTAGATGCTAACTGAAGTATCATCAACCCACCCCTCGTTGTGGTGCGATCAT
GAAATAGACACCTGCATAAGTAAGCAAGGTGGCGGTTCCATATGATTTATGTTAGCTTGCATTTAGGTTACACCCGTTGT
TACTTGCAAGAGTGTTCTCCATCGGCTAGCGTGGTGGCTTTGATCATATGGTTAGATTTGCCCTTTTTCTTGTGAGTTCA
CTTTTTTTGCAGCTAACACTTGCGTTAGTTTCAAACTGCTTTACTAATAGATTTAATTCAACCTTGAGTTGACATTTATC
TTCTCGGAAACATACACAGATAATGGTTATCTCAAGGTCGAATTACATCCGTCAGTAAAGAATTATTCATATGTTTCCGA
GAAGATAACCATTATCTTGTATGAAACATTTGAACCATTTGTGCGATTTATCGTGGCTAGACTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis