Browse Element(s) Details


Os.17170.1.S1_at

Description gb:AK111887.1
DB_XREF= gi:37988550
TID=Os.17170.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17170 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068L17, full insert sequence.
FL= gb:AK111887.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4051011/11Calcineurin B-like protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40470Os.56029.1.S1_at3/1112+25006732..25007557DC1 domain-containing protein, putative, expressed
LOC_Os12g40480Os.51888.1.S1_at11/1112+25011742..25015010expressed protein
LOC_Os12g40490Os.26366.1.S1_at11/1112+25017521..25023123LIM domain-containing protein, putative, expressed
LOC_Os12g40500Os.27326.1.A1_at8/1112+25023540..25027733expressed protein
LOC_Os12g40510Os.17170.1.S1_at11/1112+25029621..25034664Calcineurin B-like protein 3, putative, expressed
LOC_Os12g40520Os.49666.1.S1_at10/1112+25037100..25044087MATH domain containing protein, expressed
LOC_Os12g40530Os.7597.1.S1_at11/1112+25045352..25048773transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g40540Os.53316.1.S1_at11/1112+25048998..25052450expressed protein
LOC_Os12g40550Os.15144.1.S1_a_at11/1112+25053401..25058014amidase, hydantoinase/carbamoylase family protein, expressed
LOC_Os12g40560Os.8370.1.S1_at11/1112+25058218..25064696FLK, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0006970biological_processresponse to osmotic stress
GO:0009738biological_processabscisic acid mediated signaling
GO:0019722biological_processcalcium-mediated signaling
GO:0005886cellular_componentplasma membrane
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17170.1.S1_at--384--1091Chr12:25033363..25033387 (25 bp)
AGTGGCGCAATCTGGTTCTTCGTCA
LOC_Os12g40510
Os.17170.1.S1_at--1032--10611Chr12:25033381..25033405 (25 bp)
TTCGTCATCCCTCTTTGCTGAAGAA
LOC_Os12g40510
Os.17170.1.S1_at--919--5371Chr12:25033400..25033424 (25 bp)
GAAGAACATGACTCTCCAGTACCTC
LOC_Os12g40510
Os.17170.1.S1_at--179--10811Chr12:25034173..25034197 (25 bp)
TTGTCTTCCATTCCCAGGTCGATGA
LOC_Os12g40510
Os.17170.1.S1_at--876--7211Chr12:25034190..25034214 (25 bp)
GTCGATGACACCTGAATTCTTGGAT
LOC_Os12g40510
Os.17170.1.S1_at--942--2731Chr12:25034237..25034261 (25 bp)
AAGAATGCTCATGCCGGTTCATTAA
LOC_Os12g40510
Os.17170.1.S1_at--450--6611Chr12:25034284..25034308 (25 bp)
GATTGGGCAGAGACTCCAGAGCTCT
LOC_Os12g40510
Os.17170.1.S1_at--647--1371Chr12:25034301..25034325 (25 bp)
AGAGCTCTGTAGGATGTTGCATGTT
LOC_Os12g40510
Os.17170.1.S1_at--1000--191Chr12:25034420..25034444 (25 bp)
ATTTCTGTCTGAATCCGTAGATCCT
LOC_Os12g40510
Os.17170.1.S1_at--593--551Chr12:25034432..25034456 (25 bp)
ATCCGTAGATCCTTTATTCTCTTCC
LOC_Os12g40510
Os.17170.1.S1_at--522--6431Chr12:25034628..25034652 (25 bp)
GATCATGAAATGCTCTCCTTTTTTG
LOC_Os12g40510
Target Sequence 
AGTGGCGCAATCTGGTTCTTCGTCATCCCTCTTTGCTGAAGAACATGACTCTCCAGTACCTCAAGGACATCACCACTACA
TTTCCAAGCTTTGTCTTCCATTCCCAGGTCGATGACACCTGAATTCTTGGATTTGTTTGAACTCAAACCATCAGAAGAAT
GCTCATGCCGGTTCATTAAGAATTTTGATATTGGGTTGTTGGATTGGGCAGAGACTCCAGAGCTCTGTAGGATGTTGCAT
GTTCGATTTGAGAAGTTCTCAAATCTTTAAATTGATGTAACTTTGTTTCTTTCGTTTGGAAGTTTAGTGTGGCTGGAGAC
TTTCGGGGAGATGTTAAATTTCTGTCTGAATCCGTAGATCCTTTATTCTCTTCCCCTCTTTTCTGTTTTTCTGGCTAGCA
ATCAGAATATCTTTTCTGTTTTTTTGGCTAGCAATCAGAATATCGGATATAGTTTTGTGAATCTTTCATTTTGNGTACAA
AATAGGAACCTTCAAAAAAATTGATCGTGCTGGAAAATGTTCTGTTGGAGTTTGCAAATTGCAATGATCATGAAATGCTC
TCCTTTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis