Browse Element(s) Details


Os.17200.1.S1_at

Description gb:AK101774.1
DB_XREF= gi:32986983
TID=Os.17200.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033064L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033064L23, full insert sequence.
FL= gb:AK120040.1 gb:AK101774.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0931010/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09260Os.51889.1.S1_at11/1111+4961051..4962931expressed protein
LOC_Os11g09260Os.51889.1.S1_x_at11/1111+4961051..4962931expressed protein
LOC_Os11g09270OsAffx.30898.1.S1_at10/1111+4964702..4965853hypothetical protein
LOC_Os11g09280Os.10985.1.S1_at11/1111+4967059..4970854Protein disulfide-isomerase precursor, putative, expressed
LOC_Os11g09290NANA11+4972825..4975422retrotransposon protein, putative, unclassified
LOC_Os11g09300NANA11+4978545..4984107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g09310Os.17200.1.S1_at10/1111+4986813..4988731Zinc knuckle family protein, expressed
LOC_Os11g09329Os.20320.1.S1_at11/1111+4989449..5002099VHS domain containing protein, expressed
LOC_Os11g09329Os.16476.1.A1_at11/1111+4989449..5002099VHS domain containing protein, expressed
LOC_Os11g09350Os.8637.1.S1_at11/1111+5006220..5009423expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17200.1.S1_at--613--111Chr11:4987369..4987393 (25 bp)
ATTCTTCTGGAAGTAGCTCAAGCTA
LOC_Os11g09310
Os.17200.1.S1_at--369--2371Chr11:4987273..4987297 (25 bp)
AAACCTCATCATCAGCATCGTCTGA
LOC_Os11g09310
Os.17200.1.S1_at--690--1531Chr11:4987260..4987284 (25 bp)
AGCATCGTCTGAATCTGACTCCGAA
LOC_Os11g09310
Os.17200.1.S1_at--973--9471Chr11:4987247..4987271 (25 bp)
TCTGACTCCGAATCTGCATCTGCAT
LOC_Os11g09310
Os.17200.1.S1_at--535--4971Chr11:4987232..4987256 (25 bp)
GCATCTGCATCTGACAGTGATTCTG
LOC_Os11g09310
Os.17200.1.S1_at--296--3571Chr11:4987092..4987116 (25 bp)
CATTTCTTCTCGTCAAAATCGTAGA
LOC_Os11g09310
Os.17200.1.S1_at--203--1591Chr11:4986917..4986941 (25 bp)
AGCTCTAGATCTTCGTGTTGTTTGT
LOC_Os11g09310
Os.17200.1.S1_at--881--9411Chr11:4986905..4986929 (25 bp)
TCGTGTTGTTTGTATGCCGTTAATC
LOC_Os11g09310
Os.17200.1.S1_at--627--5972Chr11:4986875..4986899 (25 bp)
GAGAACCTGTGAATCATGCAACAAT
LOC_Os11g09310
Os.17200.1.S1_at--1145--3211NONE
CAAGTTCTATGTTTGGCTCGCTTAT
NONE
Os.17200.1.S1_at--501--8311Chr11:4986825..4986849 (25 bp)
GGCTCGCTTATCTTCCTGAAAGTTT
LOC_Os11g09310
Target Sequence 
ATTCTTCTGGAAGTAGCTCAAGCTACAGCTCCTCAGACTCGGAGGACAAGAAGCGGCGACCCAAAAGGAAGCAGCAGAAG
AGGAGGCACAGAAGGGAAACCTCATCATCAGCATCGTCTGAATCTGACTCCGAATCTGCATCTGCATCTGACAGTGATTC
TGATGACAAGGGCAGCCGAAAGAAGAGCAGGAAGCGAAGNGCTAGGCGCTGAGTTTGAAGAACTGGAGCAGGCAACAAGG
ACATCAATTACGATGATATAGTACTATGTCTAAATATCATTTCTTCTCGTCAAAATCGTAGATGCATGTACCAGGCATCC
TCCGACAAGCATGTAACAATTTAGGTGCAGGGCGAGTACTGTTCTATCCTCGATTGTAACAATTTCTATCCTCAACTCAG
GTCCAGGGCGAGTACTGTTCTTTTTTCCATTCTACAATGAAGTAGTATTTGAAGCTCTAGATCTTCGTGTTGTTTGTATG
CCGTTAATCATTTTGAGAACCTGTGAATCATGCAACAATGTTTTATCTCNCCAAGTTCTATGTTTGGCTCGCTTATCTTC
CTGAAAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis