Browse Element(s) Details

Os.17295.1.S1_at

Description

gb:AK121806.1
DB_XREF= gi:37991429
TID=Os.17295.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17295 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033097L10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097L10, full insert sequence.
FL= gb:AK121806.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g33450	11/11	DHHC zinc finger domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g32964	Os.11559.1.S1_at	11/11	9	+	19674158..19676631	Peroxidase 35 precursor, putative, expressed
LOC_Os09g32968	Os.9411.1.S1_at	11/11	9	+	19678026..19680933	emp24/gp25L/p24 family protein, putative, expressed
LOC_Os09g32972	OsAffx.26564.1.S1_at	2/11	9	+	19681668..19682492	hypothetical protein
LOC_Os09g32976	Os.37882.1.S1_at	11/11	9	+	19683255..19685462	60S ribosomal protein L7a, putative, expressed
LOC_Os09g32980	OsAffx.22608.3.S1_x_at	4/11	9	+	19686876..19688776	retrotransposon protein, putative, LINE subclass
LOC_Os09g32980	OsAffx.22608.3.S1_at	3/11	9	+	19686876..19688776	retrotransposon protein, putative, LINE subclass
LOC_Os09g32984	NA	NA	9	+	19691115..19691531	Auxin responsive protein
LOC_Os09g32988	Os.52095.2.S1_at	9/11	9	+	19693025..19695333	Pollen proteins Ole e I family protein, expressed
LOC_Os09g33450	Os.17295.1.S1_at	11/11	9	+	19701631..19706208	DHHC zinc finger domain containing protein, expressed
LOC_Os09g33460	Os.49632.1.S1_a_at	11/11	9	+	19710358..19712402	Double-stranded RNA binding motif family protein, expressed
LOC_Os09g33464	NA	NA	9	+	19723592..19723891	hypothetical protein
LOC_Os09g33470	Os.17268.1.S1_at	10/11	9	+	19727942..19735046	Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33470	OsAffx.26471.1.S1_at	2/11	9	+	19727942..19735046	Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33470	OsAffx.12779.1.S1_at	1/11	9	+	19727942..19735046	Peroxisomal membrane carrier protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.17295.1.S1_at--962--833	1	Chr09:19702135..19702159 (25 bp)	GGCTGGTATGCATTCGAGACGATCA	LOC_Os09g33450
Os.17295.1.S1_at--553--789	1	Chr09:19702035..19702059 (25 bp)	GGTTCAATCAGCAGCGGCCATGGTA	LOC_Os09g33450
Os.17295.1.S1_at--361--149	1	Chr09:19701992..19702016 (25 bp)	AGCACACATCACTGCATTTCTGACG	LOC_Os09g33450
Os.17295.1.S1_at--298--355	1	Chr09:19701964..19701988 (25 bp)	CATCTGCATCTATTGGATCCATCTC	LOC_Os09g33450
Os.17295.1.S1_at--230--145	1	Chr09:19701931..19701955 (25 bp)	AGAACCATGTGTGTACTCTCTTCTC	LOC_Os09g33450
Os.17295.1.S1_at--419--731	1	Chr09:19701904..19701928 (25 bp)	GTGCTGCTTTTCACCTTAGGATATA	LOC_Os09g33450
Os.17295.1.S1_at--634--1019	1	Chr09:19701883..19701907 (25 bp)	TATATACACAGTGCTTTCTTCCTCC	LOC_Os09g33450
Os.17295.1.S1_at--885--319	1	Chr09:19701764..19701788 (25 bp)	CAATGCGTGGCTTGGATTATCTATC	LOC_Os09g33450
Os.17295.1.S1_at--760--947	1	Chr09:19701680..19701704 (25 bp)	TCTGTAACTGTACCATGCTGCTCGA	LOC_Os09g33450
Os.17295.1.S1_at--17--911	1	Chr09:19701665..19701689 (25 bp)	TGCTGCTCGACTCTTACTCAAGAAA	LOC_Os09g33450
Os.17295.1.S1_at--196--995	2	Chr09:19701634..19701658 (25 bp)	TACCCAAATCATCCTCTTTTTCTAA	LOC_Os09g33450

Target Sequence

GGCTGGTATGCATTCGAGACGATCAAGTTGGGGTCACAGAAGCGGAACCTCAGAGTCGATGGACAGCATCGCTGTGCAAA
TGGGAACCGAAGCTAACTGGGGTTCAATCAGCAGCGGCCATGGTACCACCAGTTCAACTCACTAGCACACATCACTGCAT
TTCTGACGCTGCATCTGCATCTATTGGATCCATCTCATGAATGAAGAACCATGTGTGTACTCTCTTCTCCTGTGCTGCTT
TTCACCTTAGGATATATACACAGTGCTTTCTTCCTCCCGTCCTCTGTTGTTGTTCCATCCTGGAATGGGCATCTATTGAT
GCACATCCTGTTCTAGTGTNNCTTTAAGCAAAAATAACAGAAGATCTTTAACTCAATGCGTGGCTTGGATTATCTATCTG
TATATATCGAGTCTGTAAGCAAGGTTGTCGTGTTTGGTTTGGTTTGGTTTTCGACGTTCTGTAACTGTACCATGCTGCTC
GACTCTTACTCAAGAAATACTACTACCCAAATCATCCTCTTTTTCTAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis