Browse Element(s) Details


Os.17427.1.S1_at

Description gb:AK111534.1
DB_XREF= gi:37988197
TID=Os.17427.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.17427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013034D14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034D14, full insert sequence.
FL= gb:AK111534.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6055011/11ThiF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60480Os.8144.1.S1_at11/113+34324835..34327108heavy metal-associated domain containing protein, expressed
LOC_Os03g60500OsAffx.28855.3.S1_x_at5/113+34330365..34332169hypothetical protein
LOC_Os03g60509Os.9929.1.S1_at11/113+34333429..34334598expressed protein
LOC_Os03g60520Os.52542.1.S1_at1/113+34336350..34339211expressed protein
LOC_Os03g60524Os.29987.1.S1_at6/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60524Os.43567.1.S1_x_at3/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60524Os.38172.1.S1_x_at2/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60530Os.9042.1.S1_at10/113+34346027..34349308Ras-related protein ARA-3, putative, expressed
LOC_Os03g60540OsAffx.13562.1.S1_at11/113+34349796..34350356Zinc finger, C2H2 type family protein
LOC_Os03g60550Os.17427.1.S1_at11/113+34351774..34358073ThiF family protein, expressed
LOC_Os03g60550OsAffx.25657.1.S1_s_at1/113+34351774..34358073ThiF family protein, expressed
LOC_Os03g60560Os.28441.1.S1_at11/113+34363114..34364034Zinc finger, C2H2 type family protein, expressed
LOC_Os03g60570Os.15874.1.A1_at11/113+34366638..34367547Zinc finger, C2H2 type family protein, expressed
LOC_Os03g60580Os.39973.1.S1_s_at11/113+34369405..34370315Actin-depolymerizing factor 4, putative, expressed
LOC_Os03g60590Os.12749.1.S1_s_at11/113+34370595..34373158Actin-depolymerizing factor 3, putative, expressed
LOC_Os03g60600Os.16870.1.A1_at11/113+34373945..34377386Zinc knuckle family protein, expressed
LOC_Os03g60610Os.7166.1.S1_at11/113+34378288..34383367CRAL/TRIO domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009734biological_processauxin mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003824molecular_functioncatalytic activity
GO:0008642molecular_functionubiquitin-like activating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17427.1.S1_at--548--7711Chr03:34357651..34357675 (25 bp)
GGGTGCAGAGATTCATCCCGTGGCT
LOC_Os03g60550
Os.17427.1.S1_at--136--4791Chr03:34357673..34357697 (25 bp)
GCTGCCTTCATTGGCGGAGTAGCAT
LOC_Os03g60550
Os.17427.1.S1_at--917--5331Chr03:34357703..34357810 (25 bp)
GAAGTAATTAAGCTGGTCACCAAAC
LOC_Os03g60550
Os.17427.1.S1_at--456--10251Chr03:34357813..34357837 (25 bp)
TTTGTGCCTTTGCTGGGAACATTTA
LOC_Os03g60550
Os.17427.1.S1_at--1015--6411Chr03:34357852..34357876 (25 bp)
GATCACAAATCTCAAGTTTTGGCGT
LOC_Os03g60550
Os.17427.1.S1_at--744--8471Chr03:34357871..34357895 (25 bp)
TGGCGTTATAACATCAATCTGGTAT
LOC_Os03g60550
Os.17427.1.S1_at--221--10111Chr03:34357893..34357917 (25 bp)
TATAGAGCTTTTCGGAACCTCACCC
LOC_Os03g60550
Os.17427.1.S1_at--501--9731Chr03:34357921..34357945 (25 bp)
TAATTACATTAGAGTTGCCCCAGAT
LOC_Os03g60550
Os.17427.1.S1_at--647--1311Chr03:34357931..34357955 (25 bp)
AGAGTTGCCCCAGATTTTGTATTAT
LOC_Os03g60550
Os.17427.1.S1_at--672--10211Chr03:34357950..34357974 (25 bp)
TATTATGGCCTTCCGGTGCAATGAA
LOC_Os03g60550
Os.17427.1.S1_at--648--7771Chr03:34357964..34357988 (25 bp)
GGTGCAATGAAAATCACTTGTCCAT
LOC_Os03g60550
Target Sequence 
GGGTGCAGAGATTCATCCCGTGGCTGCCTTCATTGGCGGAGTAGCATCCCAAGAAGTAATTAAGCTGGTCACCAAACAGT
TTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGT
ATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGA
AAATCACTTGTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis