Browse Element(s) Details


Os.17428.1.S1_at

Description gb:AK070139.1
DB_XREF= gi:32980163
TID=Os.17428.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17428 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042K06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042K06, full insert sequence.
FL= gb:AK070139.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0642011/11Tubby protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06390Os.9627.1.S1_at11/1111+3074781..3078111Actin-7, putative, expressed
LOC_Os11g06400OsAffx.27522.1.S1_x_at7/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.3613.1.S1_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.16187.1.S1_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.3613.1.S1_x_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06410Os.7265.1.S1_at11/1111+3087445..3092224expressed protein
LOC_Os11g06410Os.55232.1.S1_at1/1111+3087445..3092224expressed protein
LOC_Os11g06420Os.17428.1.S1_at11/1111+3094367..3098577Tubby protein, putative, expressed
LOC_Os11g06430OsAffx.30842.1.S1_at9/1111+3100925..3102996hypothetical protein
LOC_Os11g06440Os.26735.1.S1_at11/1111+3106479..3108332expressed protein
LOC_Os11g06450OsAffx.30841.1.S1_at11/1111+3108856..3109796hypothetical protein
LOC_Os11g06460OsAffx.7016.1.S1_at11/1111+3112202..3114482Ribosome inactivating protein, expressed
LOC_Os11g06470OsAffx.31174.4.S1_x_at1/1111+3121149..3125105retrotransposon protein, putative, unclassified
LOC_Os11g06470OsAffx.31174.5.S1_x_at1/1111+3121149..3125105retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008081molecular_functionphosphoric diester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17428.1.S1_at--1062--4471Chr11:3097984..3098008 (25 bp)
GCCGGGTAACTGTTGCTTCTGTCAA
LOC_Os11g06420
Os.17428.1.S1_at--949--3131Chr11:3098110..3098134 (25 bp)
AATTCGGGAAGGTTGCCAAGGACAT
LOC_Os11g06420
Os.17428.1.S1_at--143--4871Chr11:3098181..3098205 (25 bp)
GCTATCTCCCTGAGTAGTTTCGACA
LOC_Os11g06420
Os.17428.1.S1_at--922--4371Chr11:3098206..3098230 (25 bp)
CCAAGCTGGCCTGCGAATAGAACTT
LOC_Os11g06420
Os.17428.1.S1_at--546--3091Chr11:3098221..3098245 (25 bp)
AATAGAACTTCCAGGCAGGCCAGAA
LOC_Os11g06420
Os.17428.1.S1_at--37--8551Chr11:3098293..3098317 (25 bp)
TGGAGCTGACCATCCCCAAGTTTAG
LOC_Os11g06420
Os.17428.1.S1_at--706--3211Chr11:3098309..3098333 (25 bp)
CAAGTTTAGCCTGGGACGCCGTTCT
LOC_Os11g06420
Os.17428.1.S1_at--259--1831Chr11:3098324..3098348 (25 bp)
ACGCCGTTCTGTTGTATGTTACTGA
LOC_Os11g06420
Os.17428.1.S1_at--754--191Chr11:3098451..3098475 (25 bp)
ATTTCTTTTTGACCCATAGCTCTCT
LOC_Os11g06420
Os.17428.1.S1_at--282--1591Chr11:3098468..3098492 (25 bp)
AGCTCTCTCTATAACAGGTATTCTG
LOC_Os11g06420
Os.17428.1.S1_at--180--5051Chr11:3098514..3098538 (25 bp)
GCAGAATTCATTTGACTGTTCTCCA
LOC_Os11g06420
Target Sequence 
GCCGGGTAACTGTTGCTTCTGTCAAGAACTTCCAGCTCATCGCAGCCACGCAGCCTGCTGCGGGAGCCCCAACTCCATCA
CAGCCTGTTCCACCACCCCCACCAGAGCATGATAAGGTCATACTGCNAATTCGGGAAGGTTGCCAAGGACATGTTCACCA
TGGATTANCNCTACCCGCTCTCAGCCTTCCAGGCATTTGCTATCTCCCTGAGTAGTTTCGACACCAAGCTGGCCTGCGAA
TAGAACTTCCAGGCAGGCCAGAAACATCATGGATGCTTCTTATTTGACGCCCNTGAGGGCATGCNCCTGGATGGAGCTGA
CCATCCCCAAGTTTAGCCTGGGACGCCGTTCTGTTGTATGTTACTGATGATGTGTTAACTCAGAAACACCCAAGCAACNA
AAGGCANAATTGTTATTTTAGCATTTAGCTTATTTATTCTGATTTTGCTTTGTAATTGAATGTTATCTTTATTTCTTTTT
GACCCATAGCTCTCTCTATAACAGGTATTCTGTATGTGCATCGGATAATTTTCGCAGAATTCATTTGACTGTTCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis