Browse Element(s) Details


OsAffx.7016.1.S1_at

Description tigr:9639.m00573
TID=OsAffx.7016.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosome-inactivating protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0646011/11Ribosome inactivating protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06410Os.7265.1.S1_at11/1111+3087445..3092224expressed protein
LOC_Os11g06410Os.55232.1.S1_at1/1111+3087445..3092224expressed protein
LOC_Os11g06420Os.17428.1.S1_at11/1111+3094367..3098577Tubby protein, putative, expressed
LOC_Os11g06430OsAffx.30842.1.S1_at9/1111+3100925..3102996hypothetical protein
LOC_Os11g06440Os.26735.1.S1_at11/1111+3106479..3108332expressed protein
LOC_Os11g06450OsAffx.30841.1.S1_at11/1111+3108856..3109796hypothetical protein
LOC_Os11g06460OsAffx.7016.1.S1_at11/1111+3112202..3114482Ribosome inactivating protein, expressed
LOC_Os11g06470OsAffx.31174.4.S1_x_at1/1111+3121149..3125105retrotransposon protein, putative, unclassified
LOC_Os11g06470OsAffx.31174.5.S1_x_at1/1111+3121149..3125105retrotransposon protein, putative, unclassified
LOC_Os11g06480OsAffx.30843.1.S1_at11/1111+3127729..3130185hypothetical protein
LOC_Os11g06480OsAffx.18707.1.S1_at2/1111+3127729..3130185hypothetical protein
LOC_Os11g06480OsAffx.15945.1.S1_at1/1111+3127729..3130185hypothetical protein
LOC_Os11g06490OsAffx.18707.1.S1_at8/1111+3130789..3132533Ribosome inactivating protein
LOC_Os11g06500OsAffx.20387.1.S1_x_at1/1111+3133931..3136258retrotransposon protein, putative, unclassified
LOC_Os11g06510OsAffx.7017.1.S1_at11/1111+3138276..3139388hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7016.1.S1_at--742--6651Chr11:3112720..3112744 (25 bp)
GTTGATGGCACTCTGTTCTGGGACA
LOC_Os11g06460
OsAffx.7016.1.S1_at--1152--10591Chr11:3112705..3112729 (25 bp)
TTCTGGGACAGCTATAACGATTACA
LOC_Os11g06460
OsAffx.7016.1.S1_at--613--1031Chr11:3112672..3112696 (25 bp)
AGGTCTGACAGGATATTGGCTCACA
LOC_Os11g06460
OsAffx.7016.1.S1_at--1155--10211Chr11:3112659..3112683 (25 bp)
TATTGGCTCACACTATCAGGACAAG
LOC_Os11g06460
OsAffx.7016.1.S1_at--794--2691Chr11:3112570..3112594 (25 bp)
AAGCTCCTGCTTCTCACTGGAGACG
LOC_Os11g06460
OsAffx.7016.1.S1_at--629--7151Chr11:3112510..3112534 (25 bp)
GTCTACGGTGACATCACGGTGCGCA
LOC_Os11g06460
OsAffx.7016.1.S1_at--609--1011Chr11:3112434..3112458 (25 bp)
AGGTTGCAGTGGCACTCACCTCTGA
LOC_Os11g06460
OsAffx.7016.1.S1_at--1094--1731Chr11:3112402..3112426 (25 bp)
ACCATTCCACTGTCGCGGTGTGTTG
LOC_Os11g06460
OsAffx.7016.1.S1_at--353--4411Chr11:3112370..3112394 (25 bp)
GCCACTCCACCATCGGGTTGAGATA
LOC_Os11g06460
OsAffx.7016.1.S1_at--1016--8411Chr11:3112261..3112285 (25 bp)
GGCCGTGACCAGCAGATACAACAGA
LOC_Os11g06460
OsAffx.7016.1.S1_at--980--331Chr11:3112246..3112270 (25 bp)
ATACAACAGATATCCCACGGCGACA
LOC_Os11g06460
Target Sequence 
GTTGATGGCACTCTGTTCTGGGACAGCTATAACGATTACAACTACACTAGGTCTGACAGGATATTGGCTCACACTATCAG
GACAAGCCTTGGCCCCGTTGAGGTGACCTACGCGGTGCTGACCAACGCCGTGGAGGCCACCGTGCAGGTCAAGCTCCTGC
TTCTCACTGGAGACGGCGCCGCCACGTTTGCTGGCAGTGACACCCTCTTCGTCTACGGTGACATCACGGTGCGCAGCCAC
TGCTTCGACGTCGCGAGCATGCTCTTCAGCCATGGCTCGCAGAACAAGGTTGCAGTGGCACTCACCTCTGACACCGCGAC
CATTCCACTGTCGCGGTGTGTTGTTGCGGTGCCACTCCACCATCGGGTTGAGATAGAGGCGAAGCTGTATGTTGAAACTT
CCAACGAAGAAGAGAGTATCAATTACACTTGTTTCCAAGGTAAGCTGGACTTCGCCGCCGGCCGTGACCAGCAGATACAA
CAGATATCCCACGGCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis