Browse Element(s) Details


Os.26735.1.S1_at

Description gb:AK105532.1
DB_XREF= gi:32990741
TID=Os.26735.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G11, full insert sequence.
FL= gb:AK105532.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0644011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06400OsAffx.27522.1.S1_x_at7/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.3613.1.S1_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.16187.1.S1_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.3613.1.S1_x_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06410Os.7265.1.S1_at11/1111+3087445..3092224expressed protein
LOC_Os11g06410Os.55232.1.S1_at1/1111+3087445..3092224expressed protein
LOC_Os11g06420Os.17428.1.S1_at11/1111+3094367..3098577Tubby protein, putative, expressed
LOC_Os11g06430OsAffx.30842.1.S1_at9/1111+3100925..3102996hypothetical protein
LOC_Os11g06440Os.26735.1.S1_at11/1111+3106479..3108332expressed protein
LOC_Os11g06450OsAffx.30841.1.S1_at11/1111+3108856..3109796hypothetical protein
LOC_Os11g06460OsAffx.7016.1.S1_at11/1111+3112202..3114482Ribosome inactivating protein, expressed
LOC_Os11g06470OsAffx.31174.4.S1_x_at1/1111+3121149..3125105retrotransposon protein, putative, unclassified
LOC_Os11g06470OsAffx.31174.5.S1_x_at1/1111+3121149..3125105retrotransposon protein, putative, unclassified
LOC_Os11g06480OsAffx.30843.1.S1_at11/1111+3127729..3130185hypothetical protein
LOC_Os11g06480OsAffx.18707.1.S1_at2/1111+3127729..3130185hypothetical protein
LOC_Os11g06480OsAffx.15945.1.S1_at1/1111+3127729..3130185hypothetical protein
LOC_Os11g06490OsAffx.18707.1.S1_at8/1111+3130789..3132533Ribosome inactivating protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26735.1.S1_at--211--3631Chr11:3107745..3107769 (25 bp)
CTTGAGCCTCTCGAAAGGCAGGTCA
LOC_Os11g06440
Os.26735.1.S1_at--890--4491Chr11:3107819..3107843 (25 bp)
GCCGATGCTCAACGCCGATTGAAAC
LOC_Os11g06440
Os.26735.1.S1_at--462--2332Chr11:3108056..3108080 (25 bp)
AAAGATGATTCCTTCTTCCCATGTT
LOC_Os11g06440
Os.26735.1.S1_at--455--10651Chr11:3108071..3108095 (25 bp)
TTCCCATGTTTTGATGCTGCATTTG
LOC_Os11g06440
Os.26735.1.S1_at--267--4771Chr11:3108086..3108110 (25 bp)
GCTGCATTTGGTGTATATCATGGCA
LOC_Os11g06440
Os.26735.1.S1_at--927--171Chr11:3108110..3108134 (25 bp)
ATTTTTGTTAGTCCTCCATGTGTGC
LOC_Os11g06440
Os.26735.1.S1_at--333--7291Chr11:3108131..3108155 (25 bp)
GTGCGCGGCTAATTCTGGGAGTAAC
LOC_Os11g06440
Os.26735.1.S1_at--806--7791Chr11:3108177..3108201 (25 bp)
GGTCGCTATGAAATGTGGCCTGTTG
LOC_Os11g06440
Os.26735.1.S1_at--374--791Chr11:3108189..3108213 (25 bp)
ATGTGGCCTGTTGTCGAGAATGTCG
LOC_Os11g06440
Os.26735.1.S1_at--1110--6811Chr11:3108250..3108274 (25 bp)
GTTTAGTTCGATTGTGTTGTGTCAT
LOC_Os11g06440
Os.26735.1.S1_at--434--7131Chr11:3108270..3108294 (25 bp)
GTCATAATTCATGTTTGGTCCTGAT
LOC_Os11g06440
Target Sequence 
CTTGAGCCTCTCGAAAGGCAGGTCAGGGAGGTGTTCCACCGCATTGTTCGCANCCGCATGGAGGGGCTCGATTCGCCGAT
GCTCAACGCCGATTGAAACATGGAGAATTCNCATTTGATCGCGCAANGTGGNGGNGATNAGGTAATNCCNATCGAACCGT
CGANGAATTTGGNTTTGATCGCGCAAATGNTGGNGGTTATAGGTAGCTNTCCTGTTCTNGGTTTTNTTCCTCNACTTGTG
GTGGTNTAGTAGTAATTATAAAATGTGNGCCNTTCTGTAAAGGAAGGGGGGAAAGGAAAGGAACCATCTTTATGTAAAGA
TGATTCCTTCTTCCCATGTTTTGATGCTGCATTTGGTGTATATCATGGCATTTTTGTTAGTCCTCCATGTGTGCGCGGCT
AATTCTGGGAGTAACTTATAGTTGAAANATCTGTGAGGTCGCTATGAAATGTGGCCTGTTGTCGAGAATGTCGACAAAAA
AATTAAACAAGAAAAAAAAATCTACTGTGGTTTAGTTCGATTGTGTTGTGTCATAATTCATGTTTGGTCCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis