Browse Element(s) Details


Os.55232.1.S1_at

Description gb:AK107703.1
DB_XREF= gi:32992912
TID=Os.55232.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55232 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-D01, full insert sequence.
FL= gb:AK107703.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g064101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06380Os.14919.1.S1_at5/1111+3062726..3067659transposon protein, putative, Mutator sub-class
LOC_Os11g06380OsAffx.29313.1.S1_at1/1111+3062726..3067659transposon protein, putative, Mutator sub-class
LOC_Os11g06390Os.9627.1.S1_at11/1111+3074781..3078111Actin-7, putative, expressed
LOC_Os11g06400OsAffx.27522.1.S1_x_at7/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.3613.1.S1_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.16187.1.S1_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.3613.1.S1_x_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06410Os.7265.1.S1_at11/1111+3087445..3092224expressed protein
LOC_Os11g06410Os.55232.1.S1_at1/1111+3087445..3092224expressed protein
LOC_Os11g06420Os.17428.1.S1_at11/1111+3094367..3098577Tubby protein, putative, expressed
LOC_Os11g06430OsAffx.30842.1.S1_at9/1111+3100925..3102996hypothetical protein
LOC_Os11g06440Os.26735.1.S1_at11/1111+3106479..3108332expressed protein
LOC_Os11g06450OsAffx.30841.1.S1_at11/1111+3108856..3109796hypothetical protein
LOC_Os11g06460OsAffx.7016.1.S1_at11/1111+3112202..3114482Ribosome inactivating protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55232.1.S1_at--865--1671Chr01:28589398..28589422 (25 bp)
AGCCGGCGTCCAGCTGATGAGTGAC
NONE
Os.55232.1.S1_at--993--691Chr01:28589414..28589438 (25 bp)
ATGAGTGACGACAGGCGACAGCATG
NONE
Os.55232.1.S1_at--136--3551Chr01:28589457..28589481 (25 bp)
CATCGACAGGCGGAGCAGTCGAGCA
NONE
Os.55232.1.S1_at--340--1531Chr01:28589470..28589494 (25 bp)
AGCAGTCGAGCAGCGGAAGTCCACC
NONE
Os.55232.1.S1_at--618--5071Chr01:28589479..28589503 (25 bp)
GCAGCGGAAGTCCACCAGCCACTGG
NONE
Os.55232.1.S1_at--896--1691Chr01:28589495..28589519 (25 bp)
AGCCACTGGCCGTTGGGCGCACCTG
NONE
Os.55232.1.S1_at--975--8251Chr01:28589561..28589585 (25 bp)
GGCAGCGCGGCGCATCAGGGCCAGA
NONE
Os.55232.1.S1_at--317--3051Chr01:28589701..28589725 (25 bp)
AATCGATCTTTGCTAGGACTATCTG
NONE
Os.55232.1.S1_at--38--3692Chr11:3088551..3088584 (25 bp)
CTTTGGCTATCCCTGAAACTTCATT
LOC_Os11g06410
Os.55232.1.S1_at--422--531Chr01:28589761..28589785 (25 bp)
ATCCCTGAAACTTCATTAGTTGAGG
NONE
Os.55232.1.S1_at--1142--151Chr01:28589789..28589813 (25 bp)
ATTTTAGTGATGGAATGTGACGAGG
NONE
Target Sequence 
AGCCGGCGTCCAGCTGATGAGTGACGACAGGCGACAGCATGGGCGAGCGGGAGGTGGCACATCGACAGGCGGAGCAGTCG
AGCAGCGGAAGTCCACCAGCCACTGGCCGTTGGGCGCACCTGCGGCAGTCGGCAAGGGCGGCTGCAGGCTGTGGCTGCAG
TTGGGCAGCGCGGCGCATCAGGGCCAGAGCCGGCGCGGCAGTCGGCGGGCCAACAAGTAGCAGGGCAGGCCAGCAGCAGC
AGCAGAGCAACAGGCTGATTCAATCTTTGCTATTTGTCTTATCCACCTTAAAGATAGTCTATTAATCGATCTTTGCTAGG
ACTATCTGTTTTGCAGATTATTTATGTCTATCCTCCTTTGGCTATCCCTGAAACTTCATTAGTTGAGGTAAATTTTAGTG
ATGGAATGTGACGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis