Browse Element(s) Details


Os.17444.1.S1_a_at

Description gb:AK060713.1
DB_XREF= gi:32970731
TID=Os.17444.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013162C23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C12, full insert sequence.
FL= gb:AK060713.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3754011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37460Os.12927.1.S1_at11/114+22095005..22097350Glutamate decarboxylase, putative, expressed
LOC_Os04g37470Os.21320.1.S1_at10/114+22097743..22100498NADH dependent 6'-deoxychalcone synthase, putative, expressed
LOC_Os04g37480Os.8600.1.S1_at11/114+22102247..22104485NADH-dependent oxidoreductase 1, putative, expressed
LOC_Os04g37490Os.11816.1.S1_at11/114+22104786..22107807NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os04g37500Os.1215.1.S1_at11/114+22111117..22113470Glutamate decarboxylase, putative, expressed
LOC_Os04g37510OsAffx.26362.1.S1_at11/114+22113602..22114033uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os04g37520OsAffx.4008.1.S1_at11/114+22115957..22118200expressed protein
LOC_Os04g37520Os.49478.1.S1_at1/114+22115957..22118200expressed protein
LOC_Os04g37530OsAffx.26363.1.S1_at11/114+22118427..22120817expressed protein
LOC_Os04g37540Os.17444.1.S1_a_at11/114+22121721..22127414expressed protein
LOC_Os04g37550Os.18235.1.S1_at10/114+22128884..22130725Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g37560OsAffx.14176.1.S1_at11/114+22131351..22131599hypothetical protein
LOC_Os04g37570OsAffx.26364.1.S1_at11/114+22134740..22136134Eukaryotic aspartyl protease family protein
LOC_Os04g37580Os.5960.1.S1_at11/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37580Os.5217.1.S1_at7/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37590OsAffx.14177.1.S1_at11/114+22139652..22142503F-box family protein, putative
LOC_Os04g37600Os.12776.1.S1_at11/114+22143167..22148131Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os04g37619Os.1605.1.S1_at10/114+22150569..22157739Zeaxanthin epoxidase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.17444.1.S1_a_at--567--8211Chr04:22126071..22126095 (25 bp)
GGAATCCTATCCTGCTCAAGACAGA
LOC_Os04g37540
Os.17444.1.S1_a_at--1114--5831Chr04:22126094..22126118 (25 bp)
GACCTAGTCCAGAGGAGATGGCTTT
LOC_Os04g37540
Os.17444.1.S1_a_at--1022--6311Chr04:22126144..22126168 (25 bp)
GATGAAATAGTTCCACCTCTGAAAC
LOC_Os04g37540
Os.17444.1.S1_a_at--296--4031Chr04:22126957..22126981 (25 bp)
CGTCACAATGTGAGGCTGCAGCAGA
LOC_Os04g37540
Os.17444.1.S1_a_at--951--1811Chr04:22127012..22127036 (25 bp)
ACGCCAGAATTTTACCGAGCAACAT
LOC_Os04g37540
Os.17444.1.S1_a_at--1121--6411Chr04:22127044..22127068 (25 bp)
GATCTCATCGTGCTGATAACCTGTG
LOC_Os04g37540
Os.17444.1.S1_a_at--865--4731Chr04:22127077..22127101 (25 bp)
GCTGTATCTTGATGGTTTTCGGCAA
LOC_Os04g37540
Os.17444.1.S1_a_at--614--2051Chr04:22127104..22127128 (25 bp)
ACTTCAGCCGTCAGTATGACTGTCT
LOC_Os04g37540
Os.17444.1.S1_a_at--621--3151Chr04:22127259..22127283 (25 bp)
AATTCTGTCTGGTGTTGGAGGCACA
LOC_Os04g37540
Os.17444.1.S1_a_at--186--3571Chr04:22127282..22127306 (25 bp)
CATAGGTGTGCGGTGCTCTGAAAGA
LOC_Os04g37540
Os.17444.1.S1_a_at--773--2011Chr04:22127325..22127349 (25 bp)
ACTCATGCTTGTCCTTGTTTCAGAA
LOC_Os04g37540
Target Sequence
GGAATCCTATCCTGCTCAAGACAGACCTAGTCCAGAGGAGATGGCTTTCTTGGTTTCTCTTGGCTGGAAAGAGGATGAAA
TAGTTCCACCTCTGAAACAGGAAGAAATTGCTGATTGTTTACGTCACAATGTGAGGCTGCAGCAGAAGCTTGAGGAGTGT
AGGGGTTAATGCAGTAACGCCAGAATTTTACCGAGCAACATGACGGGGGATCTCATCGTGCTGATAACCTGTGGATGTGA
AGCTGTATCTTGATGGTTTTCGGCAACCACTTCAGCCGTCAGTATGACTGTCTAGCTTAACAAATTGAGTTTTTTTGTTG
ATGTTTCAGCGATGTGGGGATGTTTCATGAGTAGAAAATTTTCCCTGCTGAAAAGAGGTTTTAAGGTTTTCTCCCTCATT
TTCCCAGAAGGAATACTAANTGAAATTCTGTCTGGTGTTGGAGGCACATAGGTGTGCGGTGCTCTGAAAGAATAGGTTTT
CTTTTTACTACTCATGCTTGTCCTTGTTTCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17444.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis