Browse Element(s) Details


Os.17536.1.S1_at

Description gb:AK063180.1
DB_XREF= gi:32973198
TID=Os.17536.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17536 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-A10, full insert sequence.
FL= gb:AK063180.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2667011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26660Os.5360.1.S1_at11/119+16185279..16196219respiratory burst oxidase protein E, putative, expressed
LOC_Os09g26660Os.5360.2.S1_at10/119+16185279..16196219respiratory burst oxidase protein E, putative, expressed
LOC_Os09g26670Os.17536.1.S1_at11/119+16199909..16200901expressed protein
LOC_Os09g26680OsAffx.29789.3.S1_x_at10/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26680OsAffx.20677.1.S1_at8/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26680OsAffx.29789.1.S1_x_at7/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26680OsAffx.31885.2.S1_x_at2/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26690OsAffx.20676.1.S1_at2/119+16210598..16213613transposon protein, putative, Mutator sub-class
LOC_Os09g26690OsAffx.23660.1.S1_at1/119+16210598..16213613transposon protein, putative, Mutator sub-class
LOC_Os09g26690OsAffx.25591.1.S1_x_at1/119+16210598..16213613transposon protein, putative, Mutator sub-class
LOC_Os09g26700Os.6087.1.S1_at10/119+16223957..16228369Choline/ethanolamine kinase family protein, expressed
LOC_Os09g26700OsAffx.4491.1.S1_at1/119+16223957..16228369Choline/ethanolamine kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17536.1.S1_at--152--5951Chr09:16200478..16200502 (25 bp)
GAGCACGCCTTCCAAGGTCCGGTTC
LOC_Os09g26670
Os.17536.1.S1_at--601--9191Chr09:16200468..16200492 (25 bp)
TCCAAGGTCCGGTTCACGGCGTACT
LOC_Os09g26670
Os.17536.1.S1_at--923--2151Chr09:16200404..16200428 (25 bp)
ACAGCGTCAGGAGATGCGTGGACAA
LOC_Os09g26670
Os.17536.1.S1_at--485--7591Chr09:16200122..16200146 (25 bp)
GGGCATTATCGGAATTGCACCTCTC
LOC_Os09g26670
Os.17536.1.S1_at--1133--9431Chr09:16200114..16200138 (25 bp)
TCGGAATTGCACCTCTCATTGTAGA
LOC_Os09g26670
Os.17536.1.S1_at--808--3751Chr09:16200100..16200124 (25 bp)
CTCATTGTAGAGACATGGCTCAGTG
LOC_Os09g26670
Os.17536.1.S1_at--918--3491Chr09:16200087..16200111 (25 bp)
CATGGCTCAGTGTGTATATTGTGGT
LOC_Os09g26670
Os.17536.1.S1_at--424--6891Chr09:16200028..16200052 (25 bp)
GTATATGACAATTTTGCCCCTGGGC
LOC_Os09g26670
Os.17536.1.S1_at--759--3131Chr09:16200019..16200043 (25 bp)
AATTTTGCCCCTGGGCTTGTCATAC
LOC_Os09g26670
Os.17536.1.S1_at--1041--7811Chr09:16199975..16199999 (25 bp)
GGTAATGGCCCCTCGTATGAGGACA
LOC_Os09g26670
Os.17536.1.S1_at--628--8451Chr09:16199970..16199994 (25 bp)
TGGCCCCTCGTATGAGGACATAAAT
LOC_Os09g26670
Target Sequence 
GAGCACGCCTTCCAAGGTCCGGTTCACGGCGTACTACGGCGGCGAGGGGGACGGCGCCGACGAGGGAGTCGTGGACAGCG
TCAGGAGATGCGTGGACAACGACGGCGACGGCGAGGGGGAGACGCCGACGGCGCCGGTGAGGCGGACGGCGTCGGGGAGG
AGGAGGTGGTCGACGACGACGACGACGACGACGGCGCCATTCATGGCGACGCCGTGGGAGGAGAGGGAGATGGCCGTGAG
GAGGAGGGGAGACCTGGGGTGGTACCGCCACCTCGACATGGCGGCGCTCGACGGAAGCGTCGTCCGGCTGTGGGACGGCG
AGGTCACGGCGGCGTCGCCGGGGCGGCGCGGCCGGAGGGCATTATCGGAATTGCACCTCTCATTGTAGAGACATGGCTCA
GTGTGTATATTGTGGTGTAGGACTATTGGATGGTTATTNCCATGGTTGGTGTATATGACAATTTTGCCCCTGGGCTTGTC
ATACCNNTAGCAGTATGGNTGNAGGGGTAATGGCCCCTCGTATGAGGACATAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis