Browse Element(s) Details


Os.6087.1.S1_at

Description gb:CB670749
DB_XREF= gi:29674474
DB_XREF=OSJNEe03P21.r
CLONE=OSJNEe03P21
TID=Os.6087.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.6087 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_180251.1 (A.thaliana) putative choline kinase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2670010/11Choline/ethanolamine kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26670Os.17536.1.S1_at11/119+16199909..16200901expressed protein
LOC_Os09g26680OsAffx.29789.3.S1_x_at10/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26680OsAffx.20677.1.S1_at8/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26680OsAffx.29789.1.S1_x_at7/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26680OsAffx.31885.2.S1_x_at2/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26690OsAffx.20676.1.S1_at2/119+16210598..16213613transposon protein, putative, Mutator sub-class
LOC_Os09g26690OsAffx.23660.1.S1_at1/119+16210598..16213613transposon protein, putative, Mutator sub-class
LOC_Os09g26690OsAffx.25591.1.S1_x_at1/119+16210598..16213613transposon protein, putative, Mutator sub-class
LOC_Os09g26700Os.6087.1.S1_at10/119+16223957..16228369Choline/ethanolamine kinase family protein, expressed
LOC_Os09g26700OsAffx.4491.1.S1_at1/119+16223957..16228369Choline/ethanolamine kinase family protein, expressed
LOC_Os09g26710OsAffx.30044.1.S1_at11/119+16228908..16230064hypothetical protein
LOC_Os09g26720NANA9+16231928..16232890retrotransposon protein, putative, unclassified
LOC_Os09g26730Os.9366.1.S1_at10/119+16235628..1623979220 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os09g26730Os.16370.1.S1_at4/119+16235628..1623979220 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os09g26740NANA9+16244789..16245313retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g26750NANA9+16245598..16246799hypothetical protein
LOC_Os09g26760OsAffx.30045.1.S1_at11/119+16251172..16256557DNA repair metallo-beta-lactamase family protein

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0004103molecular_functioncholine kinase activity
GO:0016301molecular_functionkinase activity
GO:0016773molecular_functionphosphotransferase activity, alcohol group as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6087.1.S1_at--257--10111NONE
TAGGCCAAGTGAGGTCCAACTGCAA
NONE
Os.6087.1.S1_at--459--491Chr09:16227679..16227703 (25 bp)
ATCTGGATGCCCTTTATGTGGAAAC
LOC_Os09g26700
Os.6087.1.S1_at--1080--1531Chr09:16227719..16227743 (25 bp)
AGCATCACACATTTACTGGGCGTTG
LOC_Os09g26700
Os.6087.1.S1_at--413--4791Chr09:16227997..16228021 (25 bp)
GCTCCCTCTCCGCATTGAAAAATGG
LOC_Os09g26700
Os.6087.1.S1_at--219--10051Chr09:16228023..16228047 (25 bp)
TAGATCGAGCTTTGGAGCTACCGCC
LOC_Os09g26700
Os.6087.1.S1_at--115--2191Chr09:16228067..16228091 (25 bp)
ACACTCTGATCAGCTGTTGTTGTCA
LOC_Os09g26700
Os.6087.1.S1_at--104--3511Chr09:16228102..16228126 (25 bp)
CATGGTAGTTAATCTCGTTCTGAAA
LOC_Os09g26700
Os.6087.1.S1_at--531--6711Chr09:16228118..16228142 (25 bp)
GTTCTGAAATTCTTCCTGTTTAGTT
LOC_Os09g26700
Os.6087.1.S1_at--746--8411Chr09:16228242..16228266 (25 bp)
GGCCCCTTTCGTACATCATGTAGTA
LOC_Os09g26700
Os.6087.1.S1_at--574--8671Chr09:16228279..16228303 (25 bp)
TGTGTGCCTATTGGGCATTCACCTG
LOC_Os09g26700
Os.6087.1.S1_at--616--131Chr09:16228295..16228319 (25 bp)
ATTCACCTGACATGCCGATGGCAAT
LOC_Os09g26700
Target Sequence 
TAGGCCAAGTGAGGTCCAACTGCAAGATCTGGATGCCCTTTATGTGGAAACAAACACCTATAGATTAGCATCACACATTT
ACTGGGCGTTGTNGGGCTCTTATTCAGGCAAAGGTATCCCCCATTGATTTCGACTATCTTGGATACTTTTTTCTACGGTA
CGACGAATACAAGAAACAGAGGGAGTCATGCCTCTCCNTTGGCAGAAAGCTCCCTCTCCGCATTGAAAAATGGCTAGATC
GAGCTTTGGAGCTACCGCCCCCAGCTTATTCATGGAGAACACTCTGATCAGCTGTTGTTGTCAAAACTCGTATCATGGTA
GTTAATCTCGTTCTGAAATTCTTCCTGTTTAGTTTTTTTGTTCCTGCAGGAGGCATATNNTTCGCCCGGTAGAAAAAAAA
TATAGTATGATCGTAGTAGACAACTGGTTGTTTGTAATAAACATAAGNCCTTTGGCCCCTTTCGTACATCATGTAGTAGT
AAGCATTTGTTGTGTGCCTATTGGGCATTCACCTGACATGCCGATGGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis