Browse Element(s) Details


OsAffx.30044.1.S1_at

Description tigr:9637.m02332
TID=OsAffx.30044.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2671011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26680OsAffx.29789.3.S1_x_at10/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26680OsAffx.20677.1.S1_at8/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26680OsAffx.29789.1.S1_x_at7/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26680OsAffx.31885.2.S1_x_at2/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26690OsAffx.20676.1.S1_at2/119+16210598..16213613transposon protein, putative, Mutator sub-class
LOC_Os09g26690OsAffx.23660.1.S1_at1/119+16210598..16213613transposon protein, putative, Mutator sub-class
LOC_Os09g26690OsAffx.25591.1.S1_x_at1/119+16210598..16213613transposon protein, putative, Mutator sub-class
LOC_Os09g26700Os.6087.1.S1_at10/119+16223957..16228369Choline/ethanolamine kinase family protein, expressed
LOC_Os09g26700OsAffx.4491.1.S1_at1/119+16223957..16228369Choline/ethanolamine kinase family protein, expressed
LOC_Os09g26710OsAffx.30044.1.S1_at11/119+16228908..16230064hypothetical protein
LOC_Os09g26720NANA9+16231928..16232890retrotransposon protein, putative, unclassified
LOC_Os09g26730Os.9366.1.S1_at10/119+16235628..1623979220 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os09g26730Os.16370.1.S1_at4/119+16235628..1623979220 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os09g26740NANA9+16244789..16245313retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g26750NANA9+16245598..16246799hypothetical protein
LOC_Os09g26760OsAffx.30045.1.S1_at11/119+16251172..16256557DNA repair metallo-beta-lactamase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30044.1.S1_at--201--7711Chr09:16229430..16229454 (25 bp)
GGGTGCACGACGTCCCACCGATCAG
LOC_Os09g26710
OsAffx.30044.1.S1_at--591--7791Chr09:16229319..16229343 (25 bp)
GGTCCGTGTCGGAGCTTCCACTCCA
LOC_Os09g26710
OsAffx.30044.1.S1_at--148--4271Chr09:16229154..16229178 (25 bp)
CCGGCGGCGACTCGCACAAGGATTT
LOC_Os09g26710
OsAffx.30044.1.S1_at--99--5711Chr09:16229146..16229170 (25 bp)
GACTCGCACAAGGATTTCGCCAAGG
LOC_Os09g26710
OsAffx.30044.1.S1_at--1106--9251Chr09:16229045..16229069 (25 bp)
TCCGGCCGCCGGAAAGCCCGTGATG
LOC_Os09g26710
OsAffx.30044.1.S1_at--1034--4551Chr09:16228993..16229017 (25 bp)
GCGCCAGCGGTGACAGCTTAGCTCA
LOC_Os09g26710
OsAffx.30044.1.S1_at--283--7771Chr09:16228985..16229009 (25 bp)
GGTGACAGCTTAGCTCAGCTTGCTC
LOC_Os09g26710
OsAffx.30044.1.S1_at--856--10451Chr09:16228976..16229000 (25 bp)
TTAGCTCAGCTTGCTCCCGTATTGA
LOC_Os09g26710
OsAffx.30044.1.S1_at--1145--10711Chr09:16228966..16228990 (25 bp)
TTGCTCCCGTATTGATGGCGCCATG
LOC_Os09g26710
OsAffx.30044.1.S1_at--327--9311Chr09:16228962..16228986 (25 bp)
TCCCGTATTGATGGCGCCATGGCTG
LOC_Os09g26710
OsAffx.30044.1.S1_at--964--4771Chr09:16228941..16228965 (25 bp)
GCTGCGGCTAGCTTGGAGGTGGTTC
LOC_Os09g26710
Target Sequence 
GGGTGCACGACGTCCCACCGATCAGCGACGCGGCCACGGCCAGCCCGAGGCGACCTCCTCCTCCGCGAGACCAGCTCGCG
CAGGCGGCGGCGCGTCGCCGCCACCACTCCCGGTCCGTGTCGGAGCTTCCACTCCACCACCACCACACGGCGGCGCTGGA
CTCCCCGAGGTCGGCGGTGGAGCTGCCATCGCCGCAGCCGCTACGGGCGAGGAAGCAGTGGGGAAGCCCGGAGACGACGA
CGACGCCGCCGACGCCGCGGGCGATCCTCTCCTCCGCCGGCGGCGACTCGCACAAGGATTTCGCCAAGGGGATCAAGAAG
CTGCTCAGCTTCGTGAGGAAGAGCAGCAGCAAGAACGGCGGCGACCAGCAGCATTCCCCGGCGCGTCCGGCCGCCGGAAA
GCCCGTGATGGGCACGGGATGGCCCGCCGCCGCGGCGGCGCCAGCGGTGACAGCTTAGCTCAGCTTGCTCCCGTATTGAT
GGCGCCATGGCTGCGGCTAGCTTGGAGGTGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis