Browse Element(s) Details


Os.17554.1.S1_at

Description gb:CB649167
DB_XREF= gi:29644160
DB_XREF=OSJNEb12P09.r
CLONE=OSJNEb12P09
TID=Os.17554.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17554 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566249.1 (A.thaliana) putative RING-H2 zinc finger protein ATL6 (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3776011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37730Os.55174.1.S1_at11/118+23761711..23763788Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37730Os.16502.1.S1_at1/118+23761711..23763788Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37740NANA8+23769952..23773292retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g37750OsAffx.17383.1.S1_at11/118+23780739..23784305Cellulase containing protein, expressed
LOC_Os08g37750Os.19280.1.A1_at11/118+23780739..23784305Cellulase containing protein, expressed
LOC_Os08g37760Os.17554.1.S1_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37760OsAffx.17384.1.S1_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37760OsAffx.17384.1.S1_s_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37770NANA8+23792703..23792963hypothetical protein
LOC_Os08g37780Os.21267.1.S1_at10/118+23794065..23801478NOL1/NOP2/sun family protein, expressed
LOC_Os08g37790Os.7759.1.S1_at10/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os08g37790OsAffx.14941.4.S1_s_at1/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os08g37800Os.338.1.S2_a_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.4.S1_s_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.2.S1_x_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S2_x_at9/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S1_x_at7/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.3.S1_x_at6/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17554.1.S1_at--737--3131Chr08:23789672..23789696 (25 bp)
AATTTTGTGCGATTCTATGCTTCGT
LOC_Os08g37760
Os.17554.1.S1_at--861--10251Chr08:23789675..23789699 (25 bp)
TTTGTGCGATTCTATGCTTCGTTTG
LOC_Os08g37760
Os.17554.1.S1_at--867--7291Chr08:23789678..23789702 (25 bp)
GTGCGATTCTATGCTTCGTTTGTAA
LOC_Os08g37760
Os.17554.1.S1_at--632--4631Chr08:23789680..23789704 (25 bp)
GCGATTCTATGCTTCGTTTGTAATT
LOC_Os08g37760
Os.17554.1.S1_at--534--6571Chr08:23789682..23789706 (25 bp)
GATTCTATGCTTCGTTTGTAATTAG
LOC_Os08g37760
Os.17554.1.S1_at--923--10551Chr08:23789684..23789708 (25 bp)
TTCTATGCTTCGTTTGTAATTAGGG
LOC_Os08g37760
Os.17554.1.S1_at--205--6311Chr08:23789728..23789752 (25 bp)
GATGAGCTTTGTCCTGTAGTACTAG
LOC_Os08g37760
Os.17554.1.S1_at--110--691Chr08:23789729..23789753 (25 bp)
ATGAGCTTTGTCCTGTAGTACTAGT
LOC_Os08g37760
Os.17554.1.S1_at--446--5892Chr08:23789731..23789755 (25 bp)
GAGCTTTGTCCTGTAGTACTAGTAT
LOC_Os08g37760
Os.17554.1.S1_at--1088--4872Chr08:23789733..23789757 (25 bp)
GCTTTGTCCTGTAGTACTAGTATTT
LOC_Os08g37760
Os.17554.1.S1_at--1011--10311Chr08:23789767..23789791 (25 bp)
TTTCAGTTTTATTTGTTGATAGACT
LOC_Os08g37760
Target Sequence 
AATTTTGTGCGATTCTATGCTTCGTTTGTAATTAGGGGTACACCATTTAATTTCANGATGAGCTTTGTCCTGTAGTACTA
GTATTTTTGCTTTTTTTTCAGTTTTATTTGTTGATAGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis