Browse Element(s) Details


Os.17676.1.S1_at

Description gb:AK099611.1
DB_XREF= gi:32984820
TID=Os.17676.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative importin alpha 1 (OJ1165_F02.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049L13, full insert sequence.
FL= gb:AK099611.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4888011/11Importin alpha-1b subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48840Os.31656.2.S1_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48840Os.31656.1.S1_x_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48850Os.31656.3.S1_at11/117+29226061..29231067pentatricopeptide, putative, expressed
LOC_Os07g48860OsAffx.5665.2.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_x_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48870Os.32634.1.S1_at11/117+29240396..29241891Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g48880Os.17676.1.S1_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48880Os.17676.3.S1_x_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48880Os.17676.2.S1_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48890OsAffx.16767.1.S1_at11/117+29252797..29257705Poly polymerase central domain containing protein, expressed
LOC_Os07g48890OsAffx.16767.2.S1_x_at11/117+29252797..29257705Poly polymerase central domain containing protein, expressed
LOC_Os07g48900NANA7+29259577..29260110hypothetical protein
LOC_Os07g48910NANA7+29266595..29268155transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g48920Os.16886.1.S1_at11/117+29269837..29276052aldehyde dehydrogenase family protein, expressed
LOC_Os07g48920Os.16886.2.S1_at3/117+29269837..29276052aldehyde dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0005635cellular_componentnuclear envelope
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17676.1.S1_at--351--3011Chr07:29246902..29246926 (25 bp)
AATGACTTGTAATGCTTCCTTCCTG
LOC_Os07g48880
Os.17676.1.S1_at--214--7071Chr07:29246894..29246918 (25 bp)
GTAATGCTTCCTTCCTGTAAGATGT
LOC_Os07g48880
Os.17676.1.S1_at--659--10671Chr07:29246887..29246911 (25 bp)
TTCCTTCCTGTAAGATGTAACCATC
LOC_Os07g48880
Os.17676.1.S1_at--965--7051Chr07:29246871..29246895 (25 bp)
GTAACCATCTGGTTCGTTGGTGTCA
LOC_Os07g48880
Os.17676.1.S1_at--406--491Chr07:29246865..29246889 (25 bp)
ATCTGGTTCGTTGGTGTCATGCCAA
LOC_Os07g48880
Os.17676.1.S1_at--235--6711Chr07:29246860..29246884 (25 bp)
GTTCGTTGGTGTCATGCCAAACCGT
LOC_Os07g48880
Os.17676.1.S1_at--1068--10831Chr07:29246855..29246879 (25 bp)
TTGGTGTCATGCCAAACCGTCACTC
LOC_Os07g48880
Os.17676.1.S1_at--645--2371Chr07:29246842..29246866 (25 bp)
AAACCGTCACTCTGCCGAATTTATA
LOC_Os07g48880
Os.17676.1.S1_at--913--7091Chr07:29246837..29246861 (25 bp)
GTCACTCTGCCGAATTTATAACATT
LOC_Os07g48880
Os.17676.1.S1_at--182--4511Chr07:29246829..29246853 (25 bp)
GCCGAATTTATAACATTACTACAAT
LOC_Os07g48880
Os.17676.1.S1_at--899--5271Chr07:29246774..29246798 (25 bp)
GAATGTTTGAGCAGGAATTTGATCT
LOC_Os07g48880
Target Sequence 
AATGACTTGTAATGCTTCCTTCCTGTAAGATGTAACCATCTGGTTCGTTGGTGTCATGCCAAACCGTCACTCTGCCGAAT
TTATAACATTACTACAATTTATGTATTATATACTAATGAAATTTTTGTGAATGTTTGAGCAGGAATTTGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis