Browse Element(s) Details


Os.17676.2.S1_at

Description gb:AK068325.1
DB_XREF= gi:32978343
TID=Os.17676.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative importin alpha 1 (OJ1165_F02.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146I03, full insert sequence.
FL= gb:AK068325.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4888011/11Importin alpha-1b subunit, putative, expressed
LOC_Os02g352301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48840Os.31656.2.S1_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48840Os.31656.1.S1_x_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48850Os.31656.3.S1_at11/117+29226061..29231067pentatricopeptide, putative, expressed
LOC_Os07g48860OsAffx.5665.2.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_x_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48870Os.32634.1.S1_at11/117+29240396..29241891Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g48880Os.17676.1.S1_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48880Os.17676.3.S1_x_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48880Os.17676.2.S1_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48890OsAffx.16767.1.S1_at11/117+29252797..29257705Poly polymerase central domain containing protein, expressed
LOC_Os07g48890OsAffx.16767.2.S1_x_at11/117+29252797..29257705Poly polymerase central domain containing protein, expressed
LOC_Os07g48900NANA7+29259577..29260110hypothetical protein
LOC_Os07g48910NANA7+29266595..29268155transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g48920Os.16886.1.S1_at11/117+29269837..29276052aldehyde dehydrogenase family protein, expressed
LOC_Os07g48920Os.16886.2.S1_at3/117+29269837..29276052aldehyde dehydrogenase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0005635cellular_componentnuclear envelope
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17676.2.S1_at--147--7451Chr07:29246184..29246208 (25 bp)
GTGTCACCTTCAACAACACTGGGTT
LOC_Os07g48880
Os.17676.2.S1_at--967--3151Chr07:29246108..29246132 (25 bp)
AATTCGATCGATCTTGCTTGATTCA
LOC_Os07g48880
Os.17676.2.S1_at--600--4931Chr07:29246093..29246117 (25 bp)
GCTTGATTCAAGTGCATGCCATTTT
LOC_Os07g48880
Os.17676.2.S1_at--65--10551Chr07:29246063..29246087 (25 bp)
TTCATGGCTCGAACTGAACTGGTGA
LOC_Os07g48880
Os.17676.2.S1_at--358--5991Chr07:29246029..29246053 (25 bp)
GAGACTTTCATATGGCATGGGCAGA
LOC_Os07g48880
Os.17676.2.S1_at--309--5631Chr07:29245966..29245990 (25 bp)
GACACGTTCCTGTATATTGATCGAC
LOC_Os07g48880
Os.17676.2.S1_at--670--8851Chr07:29245949..29245973 (25 bp)
TGATCGACAACTACTTGTTCCCAAC
LOC_Os07g48880
Os.17676.2.S1_at--823--10791Chr07:29245935..29245959 (25 bp)
TTGTTCCCAACATAGTTAGGCTCAG
LOC_Os07g48880
Os.17676.2.S1_at--1025--10431Chr07:29245920..29245944 (25 bp)
TTAGGCTCAGGTTATGCATGCACAT
LOC_Os07g48880
Os.17676.2.S1_at--137--8672Chr07:29245837..29245861 (25 bp)
TGTGGTTGTTTGCATCTTCTCAGGA
LOC_Os07g48880
Os.17676.2.S1_at--878--111Chr07:29245801..29245825 (25 bp)
ATATATCCCTTCATTTCCCGAAAGA
LOC_Os07g48880
Target Sequence 
GTGTCACCTTCAACAACACTGGGTTGATGGAAGCTAACCAAACCGAAAGCTAAGCTCGTCGTTCNCCTCGTGCTTCAATT
CGATCGATCTTGCTTGATTCAAGTGCATGCCATTTTGACAATTCATGGCTCGAACTGAACTGGTGAGTTCCAAAGGAGAC
TTTCATATGGCATGGGCAGAGAGATGCATGCAAGTTGCATATGCCAATATTCTCAAACGACACGTTCCTGTATATTGATC
GACAACTACTTGTTCCCAACATAGTTAGGCTCAGGTTATGCATGCACATGCAAGTTTATTATAATTTCTTTCGTTTGGAA
TTGGATAAGATGTGTACATGCATTATCTGTGGTTGTTTGCATCTTCTCAGGAGAACCATGCATATATATCCCTTCATTTC
CCGAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17676.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis