Browse Element(s) Details


Os.17792.1.S1_at

Description gb:AK111760.1
DB_XREF= gi:37988423
TID=Os.17792.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17792 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489A01.9 (P0489A01.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063M08, full insert sequence.
FL= gb:AK111760.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0877011/11WD-repeat protein 46, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08750OsAffx.10972.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.25107.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.2.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.505.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08760OsAffx.10973.2.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_x_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.2.S1_at10/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08770Os.17792.1.S1_at11/111+4394454..4398744WD-repeat protein 46, putative, expressed
LOC_Os01g08780Os.29290.1.S1_at10/111+4399470..4404094inositol-1,4,5-trisphosphate 5-Phosphatase, putative, expressed
LOC_Os01g08790OsAffx.23165.1.S1_x_at11/111+4412218..4412934Histone-like transcription factor and archaeal histone family protein
LOC_Os01g08800OsAffx.21912.1.S1_at11/111+4414085..4415729Cytochrome P450 family protein, expressed
LOC_Os01g08810Os.28952.1.S1_at11/111+4418120..4419907Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17792.1.S1_at--915--2911Chr01:4398178..4398202 (25 bp)
AAGGAGGTGCAATCCCTGCTTAACA
LOC_Os01g08770
Os.17792.1.S1_at--211--3831Chr01:4398193..4398217 (25 bp)
CTGCTTAACAAGCTCCAGCCAGAGA
LOC_Os01g08770
Os.17792.1.S1_at--703--5971Chr01:4398214..4398238 (25 bp)
GAGACGATAATGCTTAATCCGAACA
LOC_Os01g08770
Os.17792.1.S1_at--232--6491Chr01:4398240..4398264 (25 bp)
GATAGCTACCGTAAGACCTTCAAGG
LOC_Os01g08770
Os.17792.1.S1_at--1015--2431Chr01:4398415..4398439 (25 bp)
AAAAGGCCGTTCCTGGAGCAACACA
LOC_Os01g08770
Os.17792.1.S1_at--230--2431Chr01:4398443..4398467 (25 bp)
AAAACGATGGGAGGCCTGACAAGAA
LOC_Os01g08770
Os.17792.1.S1_at--577--8431Chr01:4398501..4398525 (25 bp)
GGCCTTGCAGCGGTTCGCAAAGAGT
LOC_Os01g08770
Os.17792.1.S1_at--911--7451Chr01:4398594..4398618 (25 bp)
GTGTGCATTGTATCGTGTAGCTGGC
LOC_Os01g08770
Os.17792.1.S1_at--485--7431Chr01:4398608..4398632 (25 bp)
GTGTAGCTGGCAAATGTCATATCTG
LOC_Os01g08770
Os.17792.1.S1_at--1059--3571Chr01:4398625..4398649 (25 bp)
CATATCTGCTTCCTTGTGAACCATA
LOC_Os01g08770
Os.17792.1.S1_at--94--7351Chr01:4398640..4398664 (25 bp)
GTGAACCATAGGCTTTTGCACATGA
LOC_Os01g08770
Target Sequence 
AAGGAGGTGCAATCCCTGCTTAACAAGCTCCAGCCAGAGACGATAATGCTTAATCCGAACATGATAGCTACCGTAAGACC
TTCAAGGAAGAAAGAGAAGAAGACCAAGAAGGAGATTGAGGAGGAGATGGAAGACGCCGTAGAGGCTGCCAAGAGCATCG
AGTTCAAGAAGAAGACCAAGGGTAGGAGCAAAGCCAGCAAGCGGGCCAAGAAGAGGGAGGAAGAAGTTTTGAAAGCCAAA
AGGCCGTTCCTGGAGCAACACAAGGAAAACGATGGGAGGCCTGACAAGAAACAGCGGGTCAGCGAGGAGATTGAGCTGCC
ANAAGGCCTTGCAGCGGTTCGCAAAGAGTAGGCAGTGACANATGGAGCACAGAATTTTCTTTTTNTTTTTGTTTGCTGCA
ANCCTCATATTTATCACTAGTGTGCATTGTATCGTGTAGCTGGCAAATGTCATATCTGCTTCCTTGTGAACCATAGGCTT
TTGCACATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis