Browse Element(s) Details


Os.17793.1.S1_at

Description gb:AK061486.1
DB_XREF= gi:32971504
TID=Os.17793.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.17793 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013004J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A03, full insert sequence.
FL= gb:AK098926.1 gb:AK061486.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2684011/11xanthine/uracil permease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26810OsAffx.22945.1.S1_at1/115+15469658..15476277retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g26810Os.49936.2.A1_at1/115+15469658..15476277retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g26810Os.27691.1.S1_x_at1/115+15469658..15476277retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g26810Os.52311.1.S1_at1/115+15469658..15476277retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g26820Os.49675.1.S1_at11/115+15477975..15482323CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os05g26830OsAffx.27029.1.S1_at11/115+15483805..15484017hypothetical protein
LOC_Os05g26840Os.17793.1.S1_at11/115+15496167..15498004xanthine/uracil permease family protein, expressed
LOC_Os05g26850OsAffx.4438.1.S1_at10/115+15507523..15509095hypothetical protein
LOC_Os05g26860OsAffx.27030.1.S1_at11/115+15509826..15512408hypothetical protein
LOC_Os05g26870Os.55476.1.S1_at11/115+15512863..15513786expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015646molecular_functionpermease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17793.1.S1_at--1079--1951Chr05:15496533..15496557 (25 bp)
ACTGGGCCGACATGAGGCAGGCCGT
LOC_Os05g26840
Os.17793.1.S1_at--874--9251Chr05:15496435..15496459 (25 bp)
TCCTACATGCTGCTCAACTCATGGG
LOC_Os05g26840
Os.17793.1.S1_at--653--9871Chr05:15496432..15496456 (25 bp)
TACATGCTGCTCAACTCATGGGACT
LOC_Os05g26840
Os.17793.1.S1_at--149--631Chr05:15496429..15496453 (25 bp)
ATGCTGCTCAACTCATGGGACTGGG
LOC_Os05g26840
Os.17793.1.S1_at--375--9111Chr05:15496428..15496452 (25 bp)
TGCTGCTCAACTCATGGGACTGGGC
LOC_Os05g26840
Os.17793.1.S1_at--246--4771Chr05:15496427..15496451 (25 bp)
GCTGCTCAACTCATGGGACTGGGCC
LOC_Os05g26840
Os.17793.1.S1_at--699--9071Chr05:15496425..15496449 (25 bp)
TGCTCAACTCATGGGACTGGGCCTG
LOC_Os05g26840
Os.17793.1.S1_at--538--9711Chr05:15496422..15496446 (25 bp)
TCAACTCATGGGACTGGGCCTGCCA
LOC_Os05g26840
Os.17793.1.S1_at--1068--2531Chr05:15496420..15496444 (25 bp)
AACTCATGGGACTGGGCCTGCCACG
LOC_Os05g26840
Os.17793.1.S1_at--1025--6511Chr05:15496253..15496277 (25 bp)
GATTTAGAAGGTGATTAGGATTTGC
LOC_Os05g26840
Os.17793.1.S1_at--675--7751Chr05:15496244..15496268 (25 bp)
GGTGATTAGGATTTGCTATATATAC
LOC_Os05g26840
Target Sequence 
ACTGGGCCGACATGAGGCAGGCCGTGCCGGCGTTCCTCACCCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGC
CTCATCGGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCGTCGCGGTGCTCCGCTCCCG
GCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCNGGAGACANATGGNGAACAGAGGAAGAACTTGGAAAT
GGCTTAATTAGCNTTTTTTTTTTGCATAATTTCCTTTTTANAAGATTTAGAAGGTGATTAGGATTTGCTATATATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17793.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis