Browse Element(s) Details


Os.178.1.S1_a_at

Description gb:J04960.1
DB_XREF= gi:169758
TID=Os.178.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.178 (NCBI UniGene Cluster)
UG_TITLE=O.sativa ADP-glucose pyrophosphorylase 51kD subunit mRNA, complete cds
DEF=O.sativa ADP-glucose pyrophosphorylase 51kD subunit mRNA, complete cds.
FL= gb:AK103906.1 gb:AK058551.1 gb:J04960.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2573411/11Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25700Os.15734.1.S1_at11/118+15504916..15509053expressed protein
LOC_Os08g25710OsAffx.17155.1.S1_x_at11/118+15509564..15513097cellulose synthase D, putative, expressed
LOC_Os08g25710OsAffx.17155.1.S1_at11/118+15509564..15513097cellulose synthase D, putative, expressed
LOC_Os08g25720Os.6055.1.S1_at11/118+15525650..15531026Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os08g25720Os.6055.3.S1_x_at10/118+15525650..15531026Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os08g25734OsAffx.29350.1.S1_at11/118+15533366..15539740Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os08g25734Os.178.1.S1_a_at11/118+15533366..15539740Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os08g25750NANA8+15543967..15547038retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g25760OsAffx.10633.1.S1_at5/118+15547807..15550262retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g25770OsAffx.17156.1.S1_at10/118+15554569..15555717hypothetical protein
LOC_Os08g25780OsAffx.29351.1.S1_at10/118+15557429..15558641hypothetical protein
LOC_Os08g25780Os.29923.1.S1_at1/118+15557429..15558641hypothetical protein
LOC_Os08g25799Os.15464.1.S1_at11/118+15562691..15571116myb family transcription factor, putative, expressed
LOC_Os08g25799Os.51485.1.S1_at10/118+15562691..15571116myb family transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019252biological_processstarch biosynthesis
GO:0010170cellular_componentglucose-1-phosphate adenylyltransferase complex
GO:0030931cellular_componentADPG pyrophosphorylase complex (sensu Eukaryota)
GO:0008878molecular_functionglucose-1-phosphate adenylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.178.1.S1_a_at--1142--2151Chr08:15535043..15535067 (25 bp)
ACACCATTCAGTAGTTGGACTCCGG
LOC_Os08g25734
Os.178.1.S1_a_at--1014--8511Chr08:15535028..15535052 (25 bp)
TGGACTCCGGTCCTGCATTTCTGAA
LOC_Os08g25734
Os.178.1.S1_a_at--776--7791Chr08:15535020..15535044 (25 bp)
GGTCCTGCATTTCTGAAGGCGCAAT
LOC_Os08g25734
Os.178.1.S1_a_at--798--5291Chr08:15535006..15535030 (25 bp)
GAAGGCGCAATAATAGAGGACTCAT
LOC_Os08g25734
Os.178.1.S1_a_at--89--6191Chr08:15534991..15535015 (25 bp)
GAGGACTCATTACTCATGGGAGCTG
LOC_Os08g25734
Os.178.1.S1_a_at--190--811Chr08:15534980..15535000 (21 bp)
ATGGGAGCTGACTACTACGAGACTG
LOC_Os08g25734
Os.178.1.S1_a_at--713--5391Chr08:15534867..15534891 (25 bp)
GAAGCAGACAAGAAACTCCTTGGTG
LOC_Os08g25734
Os.178.1.S1_a_at--755--10791Chr08:15534848..15534872 (25 bp)
TTGGTGAAAAAGGTGGCATTCCCAT
LOC_Os08g25734
Os.178.1.S1_a_at--999--4391Chr08:15534806..15534830 (25 bp)
GCCACATTAGAAGGGCAATCATCGA
LOC_Os08g25734
Os.178.1.S1_a_at--513--6771Chr08:15534022..15534046 (25 bp)
GTTACCGTGATCAAGGATGCTTTGC
LOC_Os08g25734
Os.178.1.S1_a_at--687--4991Chr08:15533651..15533675 (25 bp)
GCAGTTCAAGGCACTTTATTCCCTT
LOC_Os08g25734
Target Sequence 
ACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAAGGCGCAATAATAGAGGACTCATTACTCATGGGAGCTGACT
ACTACGAGACTGAAGCAGACAAGAAACTCCTTGGTGAAAAAGGTGGCATTCCCATTGGTATTGGGAAGAATTGCCACATT
AGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAGATAATCAATGTTGACAATGTCCAAGAAGCTGC
AAGAGAGACTGATGGATACTTTATCAAAAGTGGCATTGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTA
TATGAAGTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCATTATAAGAAGAATAAAAGCAGTTC
AAGGCACTTTATTCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.178.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis