Browse Element(s) Details


Os.17830.1.S1_at

Description gb:CR284008
DB_XREF= gi:44670574
DB_XREF=CR284008
CLONE=p831c03p3
TID=Os.17830.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17830 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein sp:Q9LT02 (A.thaliana) ATX1_ARATH Potential cation-transporting ATPase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3339010/11Cation-transporting ATPase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33350OsAffx.14938.1.S1_at10/115+19500485..19502270hypothetical protein
LOC_Os05g33360Os.8613.1.S1_at10/115+19505254..19507583Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os05g33370Os.14919.1.S1_at6/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33370Os.56216.1.S1_at1/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33370OsAffx.29313.1.S1_at1/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33380Os.2697.1.S1_a_at11/115+19523585..19525771Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os05g33380Os.8999.3.S1_x_at2/115+19523585..19525771Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os05g33390OsAffx.27138.1.S1_at11/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390Os.17830.1.S1_at10/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390Os.49370.1.S1_x_at5/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390OsAffx.5828.2.S1_at3/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390OsAffx.8984.1.S1_x_at1/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33400Os.26626.1.S1_at7/115+19548822..19550296Basic 7S globulin precursor, putative, expressed
LOC_Os05g33410Os.26626.1.S1_at1/115+19551358..19552671Basic 7S globulin precursor, putative, expressed
LOC_Os05g33420NANA5+19555731..19557051Xyloglucanase inhibitor, putative
LOC_Os05g33430Os.50625.1.S1_at10/115+19562514..19564236Basic 7S globulin precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019829molecular_functioncation-transporting ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17830.1.S1_at--23--3671Chr05:19526696..19526720 (25 bp)
CTTCACTTCAATTTTTTGCTCCACT
LOC_Os05g33390
Os.17830.1.S1_at--643--2051Chr05:19526692..19526716 (25 bp)
ACTTCAATTTTTTGCTCCACTGGCA
LOC_Os05g33390
Os.17830.1.S1_at--190--10371Chr05:19526685..19526709 (25 bp)
TTTTTTGCTCCACTGGCATAGTTTC
LOC_Os05g33390
Os.17830.1.S1_at--194--10491NONE
TTCAATCTAATATGTAGGGTTGGTT
NONE
Os.17830.1.S1_at--672--3371Chr05:19526428..19526452 (25 bp)
CAGCCCGTAGTTTAGGAGAATTTTG
LOC_Os05g33390
Os.17830.1.S1_at--83--5211Chr05:19526411..19526435 (25 bp)
GAATTTTGTCGGACTGTAGGCCCCA
LOC_Os05g33390
Os.17830.1.S1_at--387--5731Chr05:19526400..19526424 (25 bp)
GACTGTAGGCCCCATTACTAGGAGA
LOC_Os05g33390
Os.17830.1.S1_at--582--10091Chr05:19526395..19526419 (25 bp)
TAGGCCCCATTACTAGGAGATACAT
LOC_Os05g33390
Os.17830.1.S1_at--431--10471Chr05:19526386..19526410 (25 bp)
TTACTAGGAGATACATGGTCAATAT
LOC_Os05g33390
Os.17830.1.S1_at--771--8591Chr05:19526371..19526395 (25 bp)
TGGTCAATATCCATTCTGCTTACAT
LOC_Os05g33390
Os.17830.1.S1_at--1151--4311Chr05:19526361..19526385 (25 bp)
CCATTCTGCTTACATGTTGGATGAA
LOC_Os05g33390
Target Sequence 
CTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTCAATCTAATATGTAGGGTTGGTTTGGTTTGNGGCCTATATAGGCC
TTACCAAATTTTGTCAGTGTCAAATTTTGGCAANGTTTTGGCATGACTAATTTTGGTNNGGCAAAGTTGTGTTTGGATTG
AAGCCAAANTAACCTAAGTTCACTATTGAAATGGCCTATTTTCTTAGATATGCCAAAATTTGGCTTCAAACCAAATAGAT
ACTAAACACTATTGAAATTGCAAAATATTGGTAAGCCTAATTTAGGTCTCAAACCAAACCAGCCCGTAGTTTAGGAGAAT
TTTGTCGGACTGTAGGCCCCATTACTAGGAGATACATGGTCAATATCCATTCTGCTTACATGTTGGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis