Browse Element(s) Details


Os.17884.1.S1_at

Description gb:CB683420
DB_XREF= gi:29687145
DB_XREF=OSJNEf11M07.r
CLONE=OSJNEf11M07
TID=Os.17884.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.17884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU031547(E61826)~unknown protein, similar to Oryza sativa chromosome 1, P0693B08 (P0503D09.31), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4531011/11BSD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45280Os.35897.2.S1_x_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45280Os.35897.1.A1_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45290OsAffx.22543.1.S1_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45290OsAffx.22543.1.S1_x_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45300OsAffx.10304.1.S1_s_at11/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45300OsAffx.10304.2.S1_at10/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45310Os.17884.1.S1_at11/117+27035300..27036972BSD domain containing protein, expressed
LOC_Os07g45320Os.7852.2.S1_s_at11/117+27038510..27039940expressed protein
LOC_Os07g45320OsAffx.28914.1.S1_at10/117+27038510..27039940expressed protein
LOC_Os07g45320Os.7852.2.S1_at5/117+27038510..27039940expressed protein
LOC_Os07g45330Os.31460.1.S1_at11/117+27042532..27044452expressed protein
LOC_Os07g45330Os.55007.1.S1_x_at7/117+27042532..27044452expressed protein
LOC_Os07g45340OsAffx.28915.1.S1_at11/117+27047094..27048398hypothetical protein
LOC_Os07g45350Os.5183.2.S1_at11/117+27049024..27053091expressed protein
LOC_Os07g45350Os.5183.1.S1_x_at11/117+27049024..27053091expressed protein
LOC_Os07g45360Os.11258.1.S1_at11/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45360Os.11258.1.S2_at10/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45370Os.28679.1.S1_at10/117+27056913..27060589expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17884.1.S1_at--858--5551Chr07:27036388..27036412 (25 bp)
GAAAGCTGTCACTGAAGAACCACGT
LOC_Os07g45310
Os.17884.1.S1_at--362--5431Chr07:27036404..27036428 (25 bp)
GAACCACGTTCAAGCACAGGAGATG
LOC_Os07g45310
Os.17884.1.S1_at--542--7951Chr07:27036475..27036499 (25 bp)
GGATAGTGACTACTCCATGGTGTCT
LOC_Os07g45310
Os.17884.1.S1_at--614--1991Chr07:27036486..27036510 (25 bp)
ACTCCATGGTGTCTAGGCAGCGAAC
LOC_Os07g45310
Os.17884.1.S1_at--690--10091Chr07:27036499..27036523 (25 bp)
TAGGCAGCGAACAACGACCGAGGAA
LOC_Os07g45310
Os.17884.1.S1_at--538--3191Chr07:27036583..27036607 (25 bp)
CAATAATGACTCAAGCTCTGCTTTA
LOC_Os07g45310
Os.17884.1.S1_at--34--2411Chr07:27036700..27036724 (25 bp)
AAACAACGTGCCAACCTGGTATGAA
LOC_Os07g45310
Os.17884.1.S1_at--96--6911Chr07:27036734..27036758 (25 bp)
GTATCTCTATACTTTTTTGCCAATT
LOC_Os07g45310
Os.17884.1.S1_at--730--9991Chr07:27036799..27036823 (25 bp)
TAGCTGTGCTGATTATGTTATGGAT
LOC_Os07g45310
Os.17884.1.S1_at--907--3291Chr07:27036851..27036875 (25 bp)
CAAATGGCAATTGGCTATGCGTCAA
LOC_Os07g45310
Os.17884.1.S1_at--461--4871Chr07:27036864..27036888 (25 bp)
GCTATGCGTCAATTCGTTGATGTCT
LOC_Os07g45310
Target Sequence 
GAAAGCTGTCACTGAAGAACCACGTTCAAGCACAGGAGATGATGCGGTGAAAGACGGAGCAAAGCATGAGACAAGCGACT
CAAGCAAGGATAGTGACTACTCCATGGTGTCTAGGCAGCGAACAACGACCGAGGAAGAGGATCTTGAGTGGGATGAGATT
GAGGATCTTGGGGAGCATGAAGAGAAGAGAGGGNGCAATAATGACTCAAGCTCTGCTTTAAAGGAGGAATTGCGGAAGAG
GCTCAGTGTTGCTGAAGATGATGAGGATTTGAGCTGGGATATCGAGGATGATTGATGATGATAAGGCTGAAAAAACAACG
TGCCAACCTGGTATGAAGTGTTGATTGTATCTCTATACTTTTTTGCCAATTACTTGTGCAAGATACTGAAATGTGGCCAA
TAAAATTGGTTTAGCTGTGCTGATTATGTTATGGATACGTTTGTAAACTAAACTTGGTGTTATCAAATGGCAATTGGCTA
TGCGTCAATTCGTTGATGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis