Browse Element(s) Details


Os.17892.1.S1_at

Description gb:AK103610.1
DB_XREF= gi:32988819
TID=Os.17892.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17892 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133J15, full insert sequence.
FL= gb:AK069353.1 gb:AK061257.1 gb:AK103610.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g588609/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58820Os.7191.1.A1_at11/114+34769918..34770911uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os04g58830Os.10979.1.S1_at11/114+34773043..34775731Ribosome biogenesis regulatory protein containing protein, expressed
LOC_Os04g58840Os.51017.1.S1_at8/114+34778015..34780007Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58850Os.7901.1.S1_at11/114+34781950..34783076Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58860Os.17892.1.S1_at9/114+34791894..34793355Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58870Os.18157.1.S1_at11/114+34797521..34801722Exo70 exocyst complex subunit family protein, expressed
LOC_Os04g58880Os.6072.1.S1_at11/114+34802943..34809060exocyst subunit EXO70 family protein, putative, expressed
LOC_Os04g58890Os.48131.1.S1_s_at11/114+34812136..34813565expressed protein
LOC_Os04g58890OsAffx.14474.1.S1_at11/114+34812136..34813565expressed protein
LOC_Os04g58900Os.7083.1.S1_at11/114+34815800..34819282hydrolase, NUDIX family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17892.1.S1_at--839--9051Chr04:34792278..34792302 (25 bp)
TGCATGCGCCGTCGATGTCTAGCTG
LOC_Os04g58860
Os.17892.1.S1_at--426--8731Chr04:34792263..34792287 (25 bp)
TGTCTAGCTGTGTCTTCTTTCTTCA
LOC_Os04g58860
Os.17892.1.S1_at--472--9751Chr04:34792209..34792233 (25 bp)
TAATTAGTTTCACGGCTTCTCTTCT
LOC_Os04g58860
Os.17892.1.S1_at--1023--3631Chr04:34792183..34792207 (25 bp)
CTTCTTGCTTAATTTTTCTCACCGG
LOC_Os04g58860
Os.17892.1.S1_at--349--1771Chr04:34792163..34792187 (25 bp)
ACCGGAATCAATCATCTCATATCAA
LOC_Os04g58860
Os.17892.1.S1_at--722--6991Chr04:34792115..34792139 (25 bp)
GTACTAGCTTCTTAATTTAGACCGT
LOC_Os04g58860
Os.17892.1.S1_at--13--4891Chr04:34792029..34792053 (25 bp)
GCATAATAGACGTACAGCTGGGAGT
LOC_Os04g58860
Os.17892.1.S1_at--762--5751Chr04:34792003..34792027 (25 bp)
GACGTGAAGTGTCTGCATAATTCGA
LOC_Os04g58860
Os.17892.1.S1_at--985--4951Chr04:34791989..34792013 (25 bp)
GCATAATTCGATTTGCATTTGGCAA
LOC_Os04g58860
Os.17892.1.S1_at--515--271NONE
ATATGTACACCTGTGTGTCTTGCTC
NONE
Os.17892.1.S1_at--1027--9171Chr04:34791889..34791913 (25 bp)
TGCCTTTCGATTCTCTCTATAAAAA
NONE
Target Sequence 
TGCATGCGCCGTCGATGTCTAGCTGTGTCTTCTTTCTTCATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTC
ACGGCTTCTCTTCTTCTTCTTGCTTAATTTTTCTCACCGGAATCAATCATCTCATATCAATGAAGAAAAACCGATCGATG
ATNGTACTAGCTTCTTAATTTAGACCGTAGTTGGTTTGGAGCTAGTGTAGCTTGGAGTGAAAGGGAAAATTGGGGTATTC
TGAAAAGATGCATAATAGACGTACAGCTGGGAGTAGACGTGAAGTGTCTGCATAATTCGATTTGCATTTGGCAATAATTA
TATTCCAATGTGAGTACATCAATAATTAAAAAAAANTGTTCATATGTACACCTGTGTGTCTTGCTCGGCTTGCCTTTCGA
TTCTCTCTATAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis