Browse Element(s) Details


Os.17903.1.S1_at

Description gb:AK069876.1
DB_XREF= gi:32979900
TID=Os.17903.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.17903 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036K08, full insert sequence.
FL= gb:AK065350.1 gb:AK104069.1 gb:AK069876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5541011/11Glycerol kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55360Os.53947.1.S1_at11/114+32714173..32718141Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g55370OsAffx.26612.1.S1_at11/114+32721792..32723214hypothetical protein
LOC_Os04g55380OsAffx.14426.1.S1_at11/114+32727889..32728238hypothetical protein
LOC_Os04g55390OsAffx.26613.1.S1_at11/114+32729389..32730994hypothetical protein
LOC_Os04g55400OsAffx.14427.1.S1_at11/114+32733278..32734131hypothetical protein
LOC_Os04g55410Os.17903.1.S1_at11/114+32736641..32740875Glycerol kinase, putative, expressed
LOC_Os04g55410Os.54646.1.S1_at1/114+32736641..32740875Glycerol kinase, putative, expressed
LOC_Os04g55410Os.28089.1.S2_at1/114+32736641..32740875Glycerol kinase, putative, expressed
LOC_Os04g55420Os.52699.1.S1_at11/114+32744512..32747933Leucine Rich Repeat family protein, expressed
LOC_Os04g55430Os.20602.2.S1_x_at10/114+32749285..32751465hAT family dimerisation domain containing protein
LOC_Os04g55440Os.57007.1.S1_at11/114+32755775..32758622Leucine Rich Repeat family protein, expressed
LOC_Os04g55450Os.38395.3.S1_x_at11/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.4.S1_x_at9/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.2.S1_x_at9/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.5.S1_at3/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.1.S1_at1/114+32760827..32767456transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0009617biological_processresponse to bacteria
GO:0010188biological_processresponse to microbial phytotoxin
GO:0019563biological_processglycerol catabolism
GO:0042742biological_processdefense response to bacteria
GO:0004370molecular_functionglycerol kinase activity
GO:0019200molecular_functioncarbohydrate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17903.1.S1_at--54--1051Chr04:32738091..32738115 (25 bp)
AGGTGAATGATGTCCTCAGCTCCAT
LOC_Os04g55410
Os.17903.1.S1_at--1105--7771Chr04:32737996..32738020 (25 bp)
GGTGCTACTGTCAACAATCTTCTCA
LOC_Os04g55410
Os.17903.1.S1_at--482--3071Chr04:32737984..32738005 (22 bp)
AATCTTCTCATGCAGATCCAGGCTG
LOC_Os04g55410
Os.17903.1.S1_at--927--10231Chr04:32737248..32737272 (25 bp)
TATTGGGTAGCCCTGTTGTCAGACC
LOC_Os04g55410
Os.17903.1.S1_at--768--9651Chr04:32737230..32737254 (25 bp)
TCAGACCTGCTGACATCGAGACAAC
LOC_Os04g55410
Os.17903.1.S1_at--22--2211Chr04:32737210..32737234 (25 bp)
ACAACTGCCCTTGGAGCTGCGTATG
LOC_Os04g55410
Os.17903.1.S1_at--588--2251Chr04:32737149..32737173 (25 bp)
AAATTTTCGCTGGTTTGCACAAGGA
LOC_Os04g55410
Os.17903.1.S1_at--1107--1151Chr04:32737115..32737139 (25 bp)
AGTCTTCCGCCCGAAATTGGATGAG
LOC_Os04g55410
Os.17903.1.S1_at--234--1371Chr04:32737070..32737094 (25 bp)
AGACTCCTGGTACAAGGCCGTTTCA
LOC_Os04g55410
Os.17903.1.S1_at--1051--211Chr04:32737035..32737059 (25 bp)
ATTTGGCTGACCTTTCTCTTTAGAA
LOC_Os04g55410
Os.17903.1.S1_at--1029--7771Chr04:32736973..32736997 (25 bp)
GGTGCTTAGCACTTGTTATGTCCAT
LOC_Os04g55410
Target Sequence 
AGGTGAATGATGTCCTCAGCTCCATGCACAAGGATGCTGGGGAGGCAGGAGAAGTGAAGAGTGCAGAAGGGGAGTTCCTG
CTGCGCGTTGATGGTGGTGCTACTGTCAACAATCTTCTCATGCAGATCCAGGCTGATTTATTGGGTAGCCCTGTTGTCAG
ACCTGCTGACATCGAGACAACTGCCCTTGGAGCTGCGTATGCAGCTGGATTAGCTGTTGGAGTCTGGTCGAAGGAACAAA
TTTTCGCTGGTTTGCACAAGGAGAACACCANAGTCTTCCGCCCGAAATTGGATGAGGCCCACAGGAGGAAGAGAGCAGAC
TCCTGGTACAAGGCCGTTTCAAGATCATTTGATTTGGCTGACCTTTCTCTTTAGAATGACGAGGGATTTGTGAATTACTT
CTGGATTGTATAAGGTGCTTAGCACTTGTTATGTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis