Browse Element(s) Details


Os.17912.2.S1_x_at

Description gb:AK066107.1
DB_XREF= gi:32976125
TID=Os.17912.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17912 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1088D01.10 (B1088D01.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052A02, full insert sequence.
FL= gb:AK066107.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2371011/11expressed protein
LOC_Os10g256202/11No apical meristem protein, expressed
LOC_Os10g262501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23680Os.19014.1.S1_at10/111+13301776..13306281expressed protein
LOC_Os01g23680Os.47705.1.A1_at9/111+13301776..13306281expressed protein
LOC_Os01g23690OsAffx.23356.1.S1_at11/111+13309905..13310644hypothetical protein
LOC_Os01g23700NANA1+13322756..13323202hypothetical protein
LOC_Os01g23710Os.17912.2.S1_x_at11/111+13325360..13328373expressed protein
LOC_Os01g23710OsAffx.20377.1.S1_x_at6/111+13325360..13328373expressed protein
LOC_Os01g23710Os.46681.1.S1_at1/111+13325360..13328373expressed protein
LOC_Os01g23730OsAffx.23357.1.S1_at11/111+13331049..13331852retrotransposon protein, putative, unclassified
LOC_Os01g23740Os.17269.1.S1_at11/111+13336110..13339991protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os01g23750OsAffx.2068.1.S1_at11/111+13342598..13343818hypothetical protein
LOC_Os01g23760OsAffx.23358.1.S1_at11/111+13346188..13347411SRF-type transcription factor family protein
LOC_Os01g23770OsAffx.11177.1.S1_at11/111+13348897..13350191SRF-type transcription factor family protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009744biological_processresponse to sucrose stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17912.2.S1_x_at--979--891Chr01:13325852..13325876 (25 bp)
AGGCGCAGCACGAGCATCAGCATCA
LOC_Os01g23710
Os.17912.2.S1_x_at--1069--4511Chr01:13325818..13325842 (25 bp)
GCCGCAGCCAGCGTTGCTTGTGGAT
LOC_Os01g23710
Os.17912.2.S1_x_at--335--7231Chr01:13325739..13325763 (25 bp)
GTCGCGGAGCTTGACACCGAACGAA
LOC_Os01g23710
Os.17912.2.S1_x_at--279--411Chr01:13325694..13325718 (25 bp)
ATCATGGATGGCGAATTCGAGTTCA
LOC_Os01g23710
Os.17912.2.S1_x_at--525--6072Chr10:12939485..12939509 (25 bp)
GAGTTCAAATTCGAGGACAACACCG
LOC_Os10g25620
Os.17912.2.S1_x_at--404--6193Chr10:13262482..13262606 (25 bp)
GAGGACAACACCGTCCTTAAGTACA
LOC_Os10g26250
Os.17912.2.S1_x_at--655--9811Chr01:13325643..13325667 (25 bp)
TACAACGAAGTCTTTCCGGACGACG
LOC_Os01g23710
Os.17912.2.S1_x_at--744--4311Chr01:13325541..13325565 (25 bp)
CCATTCGATAATTAGGGCCCTGTTT
LOC_Os01g23710
Os.17912.2.S1_x_at--840--10071Chr01:13325529..13325553 (25 bp)
TAGGGCCCTGTTTCAAAAACCGCTG
LOC_Os01g23710
Os.17912.2.S1_x_at--188--3051Chr01:13325519..13325543 (25 bp)
TTTCAAAAACCGCTGGAATTTCCAT
LOC_Os01g23710
Os.17912.2.S1_x_at--535--10671Chr01:13325500..13325524 (25 bp)
TTCCATTTTCCCTGGCTATAAATTA
LOC_Os01g23710
Target Sequence 
AGGCGCAGCACGAGCATCAGCATCAACCGCAGGAGCCGCAGCCAGCGTTGCTTGTGGATGGCGAGGACGGCTACGGCGCC
ATAGCCGACGGCGACGGCGACACACAGCTGGGCGTCGCGGAGCTTGACACCGAACGAATAGCCGAAATGGTAAACCATAT
CATGGATGGCGAATTCGAGTTCAAATTCGAGGACAACACCGTCCTTAAGTACAACGAAGTCTTTCCGGACGACGACAAGG
TGGTGGCGGCGCCGATGATGATCGACGGCGGTGGAGACGGCGATGGCGCGGATGGAGGTGATGGAGGCGACCCATTCGAT
AATTAGGGCCCTGTTTCAAAAACCGCTGGAATTTCCATTTTCCCTGGCTATAAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17912.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis