Browse Element(s) Details


Os.17949.1.S1_a_at

Description gb:AK066456.1
DB_XREF= gi:32976474
TID=Os.17949.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17949 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1714_H10.44 (OJ1714_H10.44), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013061L22, full insert sequence.
FL= gb:AK066456.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0682011/11RIO1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06760OsAffx.28312.2.S1_at11/117+3299802..3300365VQ motif family protein
LOC_Os07g06760OsAffx.28314.1.S1_x_at2/117+3299802..3300365VQ motif family protein
LOC_Os07g06770OsAffx.28313.2.S1_s_at11/117+3305087..3306718expressed protein
LOC_Os07g06780NANA7+3307407..3311111transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g06790OsAffx.28314.1.S1_x_at11/117+3311764..3312297VQ motif family protein, expressed
LOC_Os07g06800OsAffx.16129.1.S1_at10/117+3314786..33164703-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os07g06810OsAffx.22471.1.S1_x_at11/117+3317638..3320290hypothetical protein
LOC_Os07g06820Os.17949.1.S1_a_at11/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_x_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820OsAffx.18607.1.S1_x_at3/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06830Os.16540.1.S1_at11/117+3331186..3332575alpha/beta hydrolase fold family protein, putative, expressed
LOC_Os07g06840Os.17690.1.S1_at11/117+3340497..3341896PrMC3, putative, expressed
LOC_Os07g06850Os.27810.1.S1_at11/117+3343080..3344851PrMC3, putative, expressed
LOC_Os07g06860Os.28983.1.S1_at11/117+3349432..3350972PrMC3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17949.1.S1_a_at--798--2491Chr07:3327337..3327663 (25 bp)
AACAGTCTTGGTTCAGACGCTGGAT
LOC_Os07g06820
Os.17949.1.S1_a_at--780--3531Chr07:3327716..3327740 (25 bp)
CATCCTTCGCGAATGAACCAACAGC
LOC_Os07g06820
Os.17949.1.S1_a_at--491--4671Chr07:3327739..3327763 (25 bp)
GCGGATAAGCTTTACAACCAACCAT
LOC_Os07g06820
Os.17949.1.S1_a_at--956--1731Chr07:3327759..3327783 (25 bp)
ACCATTGCTAGGATTTGTGCGGAAT
LOC_Os07g06820
Os.17949.1.S1_a_at--396--1871Chr07:3327788..3327812 (25 bp)
ACGAGCCTACCAAAAACCAGCAAGT
LOC_Os07g06820
Os.17949.1.S1_a_at--878--7311Chr07:3327846..3327870 (25 bp)
GTGCTCCTCGGAACATAGTGAATCT
LOC_Os07g06820
Os.17949.1.S1_a_at--616--7351Chr07:3327863..3327887 (25 bp)
GTGAATCTTGCACTAGTTCCGATGA
LOC_Os07g06820
Os.17949.1.S1_a_at--654--2651Chr07:3328040..3328064 (25 bp)
AAGCCAAGTGCAAGCGGTAGTCAAT
LOC_Os07g06820
Os.17949.1.S1_a_at--23--6951Chr07:3328056..3328080 (25 bp)
GTAGTCAATCTGTGTGTCGCACCAA
LOC_Os07g06820
Os.17949.1.S1_a_at--998--7471Chr07:3328067..3328091 (25 bp)
GTGTGTCGCACCAACAATGGTCAAT
LOC_Os07g06820
Os.17949.1.S1_a_at--1110--2231Chr07:3328205..3328229 (25 bp)
AAATTGAGTATAATCCCTTGCAGCA
LOC_Os07g06820
Target Sequence 
AACAGTCTTGGTTCAGACGCTGGATTATGTGAAGCAATGCGAAGCAGATATTGTCAACATGTCATTGATGCAACGCCCAT
CCTTCGCGAATGAACCAACAGCGGATAAGCTTTACAACCAACCATTGCTAGGATTTGTGCGGAATAAAAACGAGCCTACC
AAAAACCAGCAAGTACAATCAGAAGAACCTTTGGATCTGCAAAATAAGTGCTCCTCGGAACATAGTGAATCTTGCACTAG
TTCCGATGAAGACGGTTCATGGCATGAGATTTTGAAGGTGGGACCTGAGGAAAGGAAGGCTGCTCGGAAGGAAAACAAGA
AGAAAGTAAAAGCAGAAAAGAGAGAAGCTCGCAAAGATAAGATCCCAAAGGCTGAGAAGAAGAAGAGGAAGAAAATGGCA
AAAGCCAAGTGCAAGCGGTAGTCAATCTGTGTGTCGCACCAACAATGGTCAATATCATCAAAGCTAAATTAGCTATAAAA
ATCTACTAAAGTTATCATATACTTTTCAGTAGATTACAAATGTGAGATGGCCTTTATGAATGTAATGCAATTGGAAGATG
ATTTTTAAATTGAGTATAATCCCTTGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17949.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis