Browse Element(s) Details


Os.18054.1.S1_s_at

Description gb:C98684
DB_XREF= gi:3761436
DB_XREF=C98684
CLONE=E1307_1Z
TID=Os.18054.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18054 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_176911.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3127011/11ribosome-associated GTPase YjeQ family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31210Os.5633.1.S1_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31210Os.5633.2.S1_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31210Os.5633.2.S1_x_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31220OsAffx.19542.3.S1_x_at10/114+18495808..18500030retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g31230OsAffx.26267.1.S1_at11/114+18502172..18503090hypothetical protein
LOC_Os04g31240Os.10063.2.S1_at10/114+18503261..18507358esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os04g31240Os.27780.2.S1_a_at1/114+18503261..18507358esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os04g31250Os.57209.1.S1_at11/114+18508482..18509053Gamma-thionins family protein, expressed
LOC_Os04g31260NANA4+18512349..18513349hypothetical protein
LOC_Os04g31270OsAffx.14067.1.S1_at11/114+18515321..18520273ribosome-associated GTPase YjeQ family protein, expressed
LOC_Os04g31270Os.18054.1.S1_s_at11/114+18515321..18520273ribosome-associated GTPase YjeQ family protein, expressed
LOC_Os04g31290OsAffx.14069.1.S1_x_at10/114+18533150..18535080Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g31290OsAffx.14069.1.S1_at9/114+18533150..18535080Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g31300OsAffx.21756.2.S1_x_at3/114+18540647..18543504transposon protein, putative, unclassified
LOC_Os04g31300OsAffx.21756.3.S1_x_at2/114+18540647..18543504transposon protein, putative, unclassified
LOC_Os04g31310OsAffx.3964.1.S1_at11/114+18545156..18546752hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18054.1.S1_s_at--394--6271Chr04:18519907..18519927 (21 bp)
GATGTCAGATACAAAACAGGTGTCA
LOC_Os04g31270
Os.18054.1.S1_s_at--213--2491Chr04:18519917..18519941 (25 bp)
AACAGGTGTCATGGGTGTAAAGCAA
LOC_Os04g31270
Os.18054.1.S1_s_at--283--8751Chr04:18519932..18519956 (25 bp)
TGTAAAGCAAGCAGAGCCTCGTCTT
LOC_Os04g31270
Os.18054.1.S1_s_at--520--2751Chr04:18520036..18520060 (25 bp)
AAGACAACTAGTTTGATGTCAAGCA
LOC_Os04g31270
Os.18054.1.S1_s_at--659--5531Chr04:18520070..18520094 (25 bp)
GAAACGATGACCTAATTACTTTCTG
LOC_Os04g31270
Os.18054.1.S1_s_at--628--9771Chr04:18520098..18520122 (25 bp)
TAACGGCTACAAACATTGGGAACCT
LOC_Os04g31270
Os.18054.1.S1_s_at--533--7411Chr04:18520129..18520153 (25 bp)
GTGTTGTACATAGCTGGCGTAATCT
LOC_Os04g31270
Os.18054.1.S1_s_at--323--1731Chr04:18520162..18520186 (25 bp)
ACCATGCCCTTTAACTTGTATGCTG
LOC_Os04g31270
Os.18054.1.S1_s_at--774--2511Chr04:18520174..18520198 (25 bp)
AACTTGTATGCTGAACAGTGAACAC
LOC_Os04g31270
Os.18054.1.S1_s_at--93--7371Chr04:18520191..18520215 (25 bp)
GTGAACACTTGCAAATAGAAATCTG
LOC_Os04g31270
Os.18054.1.S1_s_at--353--5531Chr04:18520208..18520232 (25 bp)
GAAATCTGTAGGCAAAGGAAACTGT
LOC_Os04g31270
Target Sequence 
GATGTCAGATACAAAACAGGTGTCATGGGTGTAAAGCAAGCAGAGCCTCGTCTTCAACTCAAAAAGCNCAGANGGGTATC
AAGAAAGAAGNTTANCCAGTCAATNCTTGATGATATTGATGATGAGCNCGACGAAGACAACTAGTTTGATGTCAAGCANC
GGTCTAGGAAACGATGACCTAATTACTTTCTGNTCTAACGGCTACAAACATTGGGAACCTATGTATGTGTTGTACATAGC
TGGCGTAATCTGTAGCNCCACCATGCCCTTTAACTTGTATGCTGAACAGTGAACACTTGCAAATAGAAATCTGTAGGCAA
AGGAAACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18054.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis