Browse Element(s) Details


Os.18070.1.S1_at

Description gb:AK067234.1
DB_XREF= gi:32977252
TID=Os.18070.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.18070 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013096D14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096D14, full insert sequence.
FL= gb:AK067234.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g583904/11allantoinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58320Os.12918.2.S1_x_at11/114+34495653..34498205RNA-binding protein, putative, expressed
LOC_Os04g58320Os.12918.1.S1_s_at8/114+34495653..34498205RNA-binding protein, putative, expressed
LOC_Os04g58330Os.27014.1.S1_at11/114+34498821..34502184expressed protein
LOC_Os04g58340NANA4+34505240..34505710hypothetical protein
LOC_Os04g58350OsAffx.14466.1.S1_at11/114+34506072..34511325Transcription factor tfb2 family protein, expressed
LOC_Os04g58360OsAffx.26654.1.S1_x_at11/114+34511991..34512380hypothetical protein
LOC_Os04g58370OsAffx.14467.1.S1_at11/114+34513721..34514254hypothetical protein
LOC_Os04g58380Os.27077.1.A1_at10/114+34514531..34517028expressed protein
LOC_Os04g58390Os.18070.1.S1_at4/114+34519017..34523242allantoinase, putative, expressed
LOC_Os04g58390Os.30557.2.S2_x_at1/114+34519017..34523242allantoinase, putative, expressed
LOC_Os04g58400OsAffx.14468.1.S1_at8/114+34524408..34530702tRNA synthetases class I family protein, expressed
LOC_Os04g58410Os.17778.2.S1_x_at11/114+34532434..34536998MutS domain V family protein, expressed
LOC_Os04g58410Os.17778.2.S1_at11/114+34532434..34536998MutS domain V family protein, expressed
LOC_Os04g58410Os.17778.1.S1_at11/114+34532434..34536998MutS domain V family protein, expressed
LOC_Os04g58420Os.17079.1.S1_at11/114+34542155..34544423MLO-like protein 14, putative, expressed
LOC_Os04g58420OsAffx.14469.1.S1_x_at11/114+34542155..34544423MLO-like protein 14, putative, expressed
LOC_Os04g58430NANA4+34546356..34547261hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010136biological_processureide catabolism
GO:0004038molecular_functionallantoinase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18070.1.S1_at--547--2391Chr04:34522836..34522856 (21 bp)
AAAAAGGGTGCTGTTCTGCCGGGAT
LOC_Os04g58390
Os.18070.1.S1_at--536--9491Chr04:34522846..34522870 (25 bp)
TCTGCCGGGATACCGTGCTGATATT
LOC_Os04g58390
Os.18070.1.S1_at--334--2631Chr04:34522881..34522905 (25 bp)
AACCTGAGGCTCAATTCCATCTTGA
LOC_Os04g58390
Os.18070.1.S1_at--815--3291Chr04:34523205..34523229 (25 bp)
CAAAGGCTGCATGTGGTGCTCCAAT
LOC_Os04g58390
Os.18070.1.S1_at--294--9091Chr04:34523221..34523245 (25 bp)
TGCTCCAATCCTCGCCAAATAAAAT
NONE
Os.18070.1.S1_at--977--1051Chr04:34523340..34523364 (25 bp)
AGGTGGATCCAGTGCTTACAGTTGT
NONE
Os.18070.1.S1_at--1065--6391Chr04:34523382..34523406 (25 bp)
GATCGTATGCGCTACACATTTTGAT
NONE
Os.18070.1.S1_at--908--3291Chr04:34523421..34523445 (25 bp)
CAAATGGCAATGTCCCTGTGTGTAT
NONE
Os.18070.1.S1_at--614--7471Chr04:34523438..34523462 (25 bp)
GTGTGTATAATTTAGCCCGGCTCTT
NONE
Os.18070.1.S1_at--204--4331Chr04:34523463..34523487 (25 bp)
CCATTGTTATATACCACTCTCCATT
NONE
Os.18070.1.S1_at--435--2011Chr04:34523478..34523502 (25 bp)
ACTCTCCATTCGATTGTGCTACATT
NONE
Target Sequence 
AAAAAGGGTGCTGTTCTGCCGGGATACCGTGCTGATATTGTGGTATGGAAACCTGAGGCTCAATTCCATCTTGATGACAG
CCATCCTGTCTACCATAAGCATCGGAATATTTCGGCATATTTGGGAAAGCAGCTTTCAGGGAAGATACTGTCCNCCTTTG
TGGGTGGGAATCTTGTGTTCGCTGAAGACAAACATGCAAAGGCTGCATGTGGTGCTCCAATCCTCGCCAAATAAAATTCA
GGTGGATCCAGTGCTTACAGTTGTTGATTTGTAGTGTATATGATCGTATGCGCTACACATTTTGATTTGCGGCAAAACTG
CAAATGGCAATGTCCCTGTGTGTATAATTTAGCCCGGCTCTTCCATTGTTATATACCACTCTCCATTCGATTGTGCTACA
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis