Browse Element(s) Details


Os.18077.1.S1_at

Description gb:CB620175
DB_XREF= gi:29615162
DB_XREF=OSIIEa05D04.r
CLONE=OSIIEa05D04
TID=Os.18077.1
CNT=36
FEA=EST
TIER=ConsEnd
STK=5
UG=Os.18077 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_174753.1 (A.thaliana) hyoscyamine 6-dioxygenase hydroxylase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0930011/11oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09270NANA1+4710325..4710726hypothetical protein
LOC_Os01g09280Os.3818.1.S1_a_at11/111+4711519..4715548myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09290OsAffx.9696.1.S1_at7/111+4721172..4721561transposon protein, putative, unclassified
LOC_Os01g09300Os.18077.1.S1_at11/111+4723461..4728045oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os01g09310Os.54613.1.S1_x_at11/111+4730819..4734408expressed protein
LOC_Os01g09320Os.12492.1.S1_at11/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09320Os.25052.1.S1_x_at1/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09330OsAffx.10981.2.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09330OsAffx.10981.1.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09340OsAffx.1136.1.S1_at4/111+4750408..4753380hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0009821biological_processalkaloid biosynthesis
GO:0019748biological_processsecondary metabolism
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18077.1.S1_at--607--7831Chr01:4727277..4727301 (25 bp)
GGTCAACCTTACATCGAGTGGTCTT
LOC_Os01g09300
Os.18077.1.S1_at--539--8511Chr01:4727465..4727489 (25 bp)
TGGAACCAAGCCACGATTGCGTAGT
LOC_Os01g09300
Os.18077.1.S1_at--373--6591Chr01:4727479..4727503 (25 bp)
GATTGCGTAGTCGAGTGCCTGCCAA
LOC_Os01g09300
Os.18077.1.S1_at--31--9191Chr01:4727494..4727518 (25 bp)
TGCCTGCCAACCTGCAAATCTGAAT
LOC_Os01g09300
Os.18077.1.S1_at--646--2911Chr01:4727680..4727704 (25 bp)
AAGGATACGCATGCCGATCTGACCG
LOC_Os01g09300
Os.18077.1.S1_at--348--6411Chr01:4727695..4727719 (25 bp)
GATCTGACCGCTTACAGCAGCAACA
LOC_Os01g09300
Os.18077.1.S1_at--672--2671Chr01:4727734..4727758 (25 bp)
AAGCGCCATTTTGATCTCATCCAAG
LOC_Os01g09300
Os.18077.1.S1_at--1014--3231Chr01:4727755..4727779 (25 bp)
CAAGCTCTCAGCTGTACTTAAGATG
LOC_Os01g09300
Os.18077.1.S1_at--1122--3871Chr01:4727852..4727876 (25 bp)
CTGTAACCCCAGTCTCATAGTGATA
LOC_Os01g09300
Os.18077.1.S1_at--381--8271Chr01:4727928..4727952 (25 bp)
GGCATCTGTTTTTGTACTACCATAT
LOC_Os01g09300
Os.18077.1.S1_at--114--1091Chr01:4727968..4727992 (25 bp)
AGGGCTCATGCTTTTCGCTGTCGAT
LOC_Os01g09300
Target Sequence 
GGTCAACCTTACATCGAGTGGTCTTAGATGGACGAGAACGTCATTCTATTGCGTTCTTTGTGGAACCAAGCCACGATTGC
GTAGTCGAGTGCCTGCCAACCTGCAAATCTGAATCAAATCCTCCAAAGTTCCCTCCGATCACTTGCTCGGCATACCTATC
GCAGCGGTACAAGGATACGCATGCCGATCTGACCGCTTACAGCAGCAACAAGGCCTAGAAGGCCAAGCGCCATTTTGATC
TCATCCAAGCTCTCAGCTGTACTTAAGATGTACAACCTGCAATAATAATCCCNTAGGATGGATTGATGGTGTTCTATACT
AATTAAATTAATCCCAGTGTACCTGTAACCCCAGTCTCATAGTGATATAGTAGTATACTAGTGATAGTACATTGTTCATG
AAGTGAGGAGTGAGCAGTGGCATCTGTTTTTGTACTACCATATGTGTGGGTGAGCTCCAGGGCTCATGCTTTTCGCTGTC
GAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis