Browse Element(s) Details


Os.18169.2.S1_x_at

Description gb:NM_183562.1
DB_XREF= gi:34894251
TID=Os.18169.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1836011/11AUX/IAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18310Os.57179.1.S1_at5/111+10285754..10286422hypothetical protein
LOC_Os01g18310OsAffx.21147.1.S1_at1/111+10285754..10286422hypothetical protein
LOC_Os01g18320Os.5439.1.S1_a_at11/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18320OsAffx.20253.1.S1_x_at2/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18330OsAffx.23288.1.S1_at11/111+10294491..10294817hypothetical protein
LOC_Os01g18340NANA1+10300522..10300989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18350OsAffx.11095.1.S1_at11/111+10304895..10305419hypothetical protein
LOC_Os01g18360Os.18169.2.S1_x_at11/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18360Os.18169.2.S1_at10/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18360Os.18169.1.S1_at8/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18370OsAffx.10738.2.S1_at10/111+10312861..10315287hypothetical protein
LOC_Os01g18370OsAffx.10738.1.S1_at8/111+10312861..10315287hypothetical protein
LOC_Os01g18390OsAffx.18764.2.S1_at11/111+10330316..10334290hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009733biological_processresponse to auxin stimulus
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18169.2.S1_x_at--770--3831Chr01:10309386..10309410 (25 bp)
CTGCTGATGATAGCATCCCTTCTAC
LOC_Os01g18360
Os.18169.2.S1_x_at--128--291Chr01:10309395..10309417 (23 bp)
ATAGCATCCCTTCTACTCCAAGGAA
LOC_Os01g18360
Os.18169.2.S1_x_at--554--2931Chr01:10310414..10310437 (24 bp)
AAGGAACAGCCAAGTGCACGCCGAT
LOC_Os01g18360
Os.18169.2.S1_x_at--901--2851Chr01:10310424..10310448 (25 bp)
AAGTGCACGCCGATTGGCCGCCGAT
LOC_Os01g18360
Os.18169.2.S1_x_at--884--4031Chr01:10310454..10310478 (25 bp)
CGTTCCTCAGGAGCGCCTTGCAGAA
LOC_Os01g18360
Os.18169.2.S1_x_at--305--9371Chr01:10310568..10310592 (25 bp)
TCGACCTGCTCTTGCTGGATGGGTA
LOC_Os01g18360
Os.18169.2.S1_x_at--1159--8551Chr01:10310583..10310607 (25 bp)
TGGATGGGTATGACAGCCTCCTCAT
LOC_Os01g18360
Os.18169.2.S1_x_at--818--371Chr01:10310606..10310630 (25 bp)
ATCAAGCTCTGCCACATGTTCAAGA
LOC_Os01g18360
Os.18169.2.S1_x_at--181--1831Chr01:10310630..10311055 (25 bp)
ACGCCCATCACCTATGCTGATGTTA
LOC_Os01g18360
Os.18169.2.S1_x_at--848--9691Chr01:10311066..10311090 (25 bp)
TCAACAAGTTCCTGGCCAGAAGGCT
LOC_Os01g18360
Os.18169.2.S1_x_at--440--3511Chr01:10311094..10311118 (25 bp)
CATGTCCTCACCTATGAAGACCAGG
LOC_Os01g18360
Target Sequence 
CTGCTGATGATAGCATCCCTTCTACTCCAAGGAACAGCCAAGTGCACGCCGATTGGCCGCCGATCAAGCCGTTCCTCAGG
AGCGCCTTGCAGAAGGCGTCGGCCGCTGGCGGCGGCGGCGCTCGCCGACGGCGAACGCTGTTCGTGAAGGTGTACATGGA
GGGCGTCCCGATCGGCCGGAAGCTCGACCTGCTCTTGCTGGATGGGTATGACAGCCTCCTCATCAAGCTCTGCCACATGT
TCAAGACGCCCATCACCTATGCTGATGTTATGGAGTGCCATCAACAAGTTCCTGGCCAGAAGGCTGCCCATGTCCTCACC
TATGAAGACCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18169.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis