Browse Element(s) Details


Os.18177.1.S1_at

Description gb:AK072447.1
DB_XREF= gi:32982470
TID=Os.18177.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18177 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023109G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023109G16, full insert sequence.
FL= gb:AK072447.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0410411/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04040NANA11+1633652..1635917retrotransposon protein, putative, unclassified
LOC_Os11g04050NANA11+1638660..1638989hypothetical protein
LOC_Os11g04060NANA11+1640193..1644545major facilitator superfamily antiporter, putative
LOC_Os11g04070Os.25811.1.S1_at1/1111+1645485..164785460S acidic ribosomal protein P0, putative, expressed
LOC_Os11g04080Os.20602.2.S1_x_at11/1111+1648846..1651020hAT family dimerisation domain containing protein
LOC_Os11g04090NANA11+1654934..1655377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g04104Os.18177.1.S1_at11/1111+1656866..1667105transporter, putative, expressed
LOC_Os11g04104Os.9752.2.S1_x_at7/1111+1656866..1667105transporter, putative, expressed
LOC_Os11g04104Os.9752.3.S1_x_at6/1111+1656866..1667105transporter, putative, expressed
LOC_Os11g04120OsAffx.30808.1.S1_at11/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.30808.1.S1_x_at11/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.30808.2.S1_x_at2/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.23391.1.S1_at1/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.27782.1.S1_at1/1111+1669896..1671817hypothetical protein
LOC_Os11g04130OsAffx.30809.1.S1_x_at11/1111+1673387..1673715nodulin MtN21 family protein, putative
LOC_Os11g04140Os.53105.1.S1_at6/1111+1676806..1678456Integral membrane protein DUF6 containing protein
LOC_Os11g04150OsAffx.19478.1.S1_at11/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04150OsAffx.19478.2.S1_s_at9/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04150OsAffx.19478.2.S1_at9/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04160Os.53234.1.S1_at3/1111+1688435..16903414'-phosphopantetheinyl transferase superfamily protein
LOC_Os11g04170Os.49766.1.S1_at11/1111+1690862..1693286Calcium-dependent protein kinase, isoform 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18177.1.S1_at--1019--9451Chr11:1657272..1657296 (25 bp)
TCTGGCCGTGCCACAGCAGCATGAT
LOC_Os11g04104
Os.18177.1.S1_at--992--4491Chr11:1657268..1657292 (25 bp)
GCCGTGCCACAGCAGCATGATACAA
LOC_Os11g04104
Os.18177.1.S1_at--22--4411Chr11:1657263..1657287 (25 bp)
GCCACAGCAGCATGATACAAATTAG
LOC_Os11g04104
Os.18177.1.S1_at--401--3371Chr11:1657171..1657195 (25 bp)
CAGCCGGCTGTGAAGCGAAGGCATA
LOC_Os11g04104
Os.18177.1.S1_at--297--5331Chr11:1657106..1657130 (25 bp)
GAAGTGAGGGTTGGTACCTCCTTAT
LOC_Os11g04104
Os.18177.1.S1_at--191--6631Chr11:1657097..1657121 (25 bp)
GTTGGTACCTCCTTATGCTTGTATA
LOC_Os11g04104
Os.18177.1.S1_at--264--7851Chr11:1657094..1657118 (25 bp)
GGTACCTCCTTATGCTTGTATAGTA
LOC_Os11g04104
Os.18177.1.S1_at--492--3671Chr11:1657086..1657110 (25 bp)
CTTATGCTTGTATAGTAGGTGCCAG
LOC_Os11g04104
Os.18177.1.S1_at--437--9071Chr11:1657082..1657106 (25 bp)
TGCTTGTATAGTAGGTGCCAGATAT
LOC_Os11g04104
Os.18177.1.S1_at--355--1551Chr11:1656954..1656978 (25 bp)
AGCATTCTACTAGTATAATGTATAG
LOC_Os11g04104
Os.18177.1.S1_at--333--6891Chr11:1656935..1656959 (25 bp)
GTATAGAGTACTACATTGTAACTAG
LOC_Os11g04104
Target Sequence 
TCTGGCCGTGCCACAGCAGCATGATACAAATTAGACTGTTCAGGTATACTACAGATCTAGATTCTTCAGAACTTCAGATG
TTGGCAATTTCATGAGCCCTGCAGCCGGCTGTGAAGCGAAGGCATATAACATGATGCTCATCTGGATGTCCCAGGAGCAA
TAGATAGAAGTGAGGGTTGGTACCTCCTTATGCTTGTATAGTAGGTGCCAGATATGCAATTGCAGCATTTCAGCGAAAGG
AATATATATAGTTGGGGGTAAATGGTGGCCAAATTGATGGCTAGGTTTTTCATGGCCAGCCTACATGTAATACCGAGTAG
CATTCTACTAGTATAATGTATAGAGTACTACATTGTAACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis