Browse Element(s) Details


Os.18191.1.S1_at

Description gb:AK071649.1
DB_XREF= gi:32981672
TID=Os.18191.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18191 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (OJ1116_C08.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107C10, full insert sequence.
FL= gb:AK071649.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1149011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11430Os.47463.1.S1_x_at3/117+6290033..6291512transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11430Os.14491.2.S1_x_at3/117+6290033..6291512transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11440Os.57449.1.S1_x_at1/117+6292915..6294607Chalcone synthase, putative, expressed
LOC_Os07g11450OsAffx.22460.1.S1_at10/117+6298846..6300472retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g11460NANA7+6302225..6305060hypothetical protein
LOC_Os07g11480Os.1709.1.S1_x_at11/117+6306382..6310864retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11480Os.31497.2.S1_x_at1/117+6306382..6310864retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11490Os.18191.1.S1_at11/117+6314018..6316359expressed protein
LOC_Os07g11500Os.40855.2.S1_x_at10/117+6326841..6329366hypothetical protein
LOC_Os07g11500Os.40855.4.S1_x_at3/117+6326841..6329366hypothetical protein
LOC_Os07g11510Os.39040.3.S1_x_at11/117+6334472..6335224Seed allergenic protein RA5 precursor, putative, expressed
LOC_Os07g11510Os.5529.4.S1_x_at1/117+6334472..6335224Seed allergenic protein RA5 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18191.1.S1_at--361--7991Chr07:6314875..6314899 (25 bp)
GGATGAATCCTTACGGATGCTGCCG
LOC_Os07g11490
Os.18191.1.S1_at--279--7991Chr07:6314861..6314885 (25 bp)
GGATGCTGCCGTCATGCACGTTGTC
LOC_Os07g11490
Os.18191.1.S1_at--860--651Chr07:6314848..6314872 (25 bp)
ATGCACGTTGTCCACCTGTGCGTTG
LOC_Os07g11490
Os.18191.1.S1_at--375--3891Chr07:6314833..6314857 (25 bp)
CTGTGCGTTGTCATGCGGCAGATAA
LOC_Os07g11490
Os.18191.1.S1_at--278--10511Chr07:6314607..6314627 (21 bp)
TTCAAGTCAGATGCCGTAAGGATTC
LOC_Os07g11490
Os.18191.1.S1_at--129--10551Chr07:6314437..6314461 (25 bp)
TTCATAGATACATTATGCCACTGGG
LOC_Os07g11490
Os.18191.1.S1_at--165--2752Chr07:11721515..11721539 (25 bp)
AAGAAACTACTCAATTGTTTGGCAG
NONE
Os.18191.1.S1_at--434--9111Chr07:6314262..6314371 (25 bp)
TGCTGAATAGTGCTGCTGTGCTTCT
LOC_Os07g11490
Os.18191.1.S1_at--738--4892Chr07:18761815..18761845 (25 bp)
GCTTTTGGCCATTGCGCTACTGCTG
NONE
Os.18191.1.S1_at--538--9151Chr07:6314202..6314226 (25 bp)
TGCGCTACTGCTGCTGTGATGCTAT
LOC_Os07g11490
Os.18191.1.S1_at--894--6671Chr07:6314162..6314186 (25 bp)
GTTGCTCTCGCAGTAGCAGGAATAT
LOC_Os07g11490
Target Sequence 
GGATGAATCCTTACGGATGCTGCCGTCATGCACGTTGTCCACCTGTGCGTTGTCATGCGGCAGATAAACGGGCTGGAGCA
GCAATACGTATGAACATAAGTTGCTGCTCATACAATACATGTGAGGATTCTACCATTAAATGCACAATGACCCAATTTGA
GGATCAGTTTAGCACTATAAAACCTGATGGGATTCAAGTCAGATGCCGTAAGGATTCATAGATACATTATGCCACTGGGG
TACATGTAATTCAAGTACAATAAGAAACTACTCAATTGTTTGGCAGCAATTTTGCATCATCAGATGCTGAATAGTGCTGC
TGTGCTTCTGGCCGTTGTGCTGTTGCTGCTGTGCTTTTGGCCATTGCGCTACTGCTGCTGTGATGCTATTGCAGATGTGC
TGCTGTTGCTCTCGCAGTAGCAGGAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis