Browse Element(s) Details


Os.18206.1.S1_at

Description gb:AK062929.1
DB_XREF= gi:32972947
TID=Os.18206.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18206 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 60S ribosomal protein L30 (P0425G02.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-A05, full insert sequence.
FL= gb:AK062929.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5973011/1160S ribosomal protein L30, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59680Os.54928.1.S1_at11/111+34851347..34853377Harpin-induced protein 1 containing protein, expressed
LOC_Os01g59690Os.11125.1.S1_a_at11/111+34858623..34860620F-box family protein, putative, expressed
LOC_Os01g59700OsAffx.11667.1.S1_at11/111+34863722..34864295hypothetical protein
LOC_Os01g59710OsAffx.21655.1.S1_at11/111+34872822..34874488hypothetical protein
LOC_Os01g59720OsAffx.11669.1.S1_at11/111+34874931..34876166hypothetical protein
LOC_Os01g59730Os.18206.1.S1_at11/111+34877208..3487948460S ribosomal protein L30, putative, expressed
LOC_Os01g59740Os.7103.1.S1_at11/111+34885058..34886784expressed protein
LOC_Os01g59750OsAffx.23859.1.S1_at10/111+34887517..3489115214 kDa zinc-binding protein, putative, expressed
LOC_Os01g59760Os.42200.1.S1_at10/111+34892143..34895139bZIP transcription factor family protein, expressed
LOC_Os01g59770NANA1+34896958..34897269hypothetical protein
LOC_Os01g59780OsAffx.21654.1.S1_at11/111+34901681..34904452AP2 domain containing protein, expressed
LOC_Os01g59780OsAffx.21654.1.S1_x_at11/111+34901681..34904452AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18206.1.S1_at--952--7591Chr01:34877962..34877986 (25 bp)
GGGAAGCTAGTTATCGTTGCAAACA
LOC_Os01g59730
Os.18206.1.S1_at--456--7011Chr01:34877672..34877696 (25 bp)
GTACTACCGAGTGTGCTGTCTCAGT
LOC_Os01g59730
Os.18206.1.S1_at--126--3891Chr01:34877657..34877681 (25 bp)
CTGTCTCAGTGTCGTCGATCCTGGT
LOC_Os01g59730
Os.18206.1.S1_at--568--7371Chr01:34877521..34877545 (25 bp)
GTGACTCGGATATTACCAAGCAATT
LOC_Os01g59730
Os.18206.1.S1_at--619--4991Chr01:34877477..34877501 (25 bp)
GCATGCATTGGCCTTGTGACCGATC
LOC_Os01g59730
Os.18206.1.S1_at--1040--7371Chr01:34877462..34877486 (25 bp)
GTGACCGATCTTATCTTCACTTTTT
LOC_Os01g59730
Os.18206.1.S1_at--923--10191Chr01:34877419..34877443 (25 bp)
TATATCTTCATACGGTGTTCTTGTG
LOC_Os01g59730
Os.18206.1.S1_at--102--10791Chr01:34877381..34877405 (25 bp)
TTGATGAACCAAACCTGGCACACTT
LOC_Os01g59730
Os.18206.1.S1_at--1096--5111Chr01:34877364..34877388 (25 bp)
GCACACTTCAATAGCATCGCCTAGT
LOC_Os01g59730
Os.18206.1.S1_at--438--531Chr01:34877349..34877373 (25 bp)
ATCGCCTAGTTTTGCTCTGCTAAGC
LOC_Os01g59730
Os.18206.1.S1_at--152--9491Chr01:34877334..34877358 (25 bp)
TCTGCTAAGCATCTGTCAACGGTAA
LOC_Os01g59730
Target Sequence 
GGGAAGCTAGTTATCGTTGCAAACAACTGCCCTCCACTTAGGAAGTCTGAAATTGAGTACTATGCTATGCTGGGAAAAGT
TAGTGTGTATCACTTCAATGGAAACAATGTTGATCTTGGCACTGCCTGCGGCAAGTACTACCGAGTGTGCTGTCTCAGTG
TCGTCGATCCTGGTGACTCGGATATTACCAAGCAATTACCTGAGAGTCATTGATGTGCATGCATTGGCCTTGTGACCGAT
CTTATCTTCACTTTTTGCTCACATGAAAAAGATATATATCTTCATACGGTGTTCTTGTGAAGTTGCGATACATTGATGAA
CCAAACCTGGCACACTTCAATAGCATCGCCTAGTTTTGCTCTGCTAAGCATCTGTCAACGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis