Browse Element(s) Details


Os.18266.1.S1_at

Description gb:AK121124.1
DB_XREF= gi:37990747
TID=Os.18266.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18266 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023074N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074N24, full insert sequence.
FL= gb:AK121124.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g094305/11Cytochrome P450 79A1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09410OsAffx.25818.3.S1_at9/114+5005838..5008914hAT family dimerisation domain containing protein
LOC_Os04g09420NANA4+5014585..5015069hypothetical protein
LOC_Os04g09430Os.18266.1.S1_at5/114+5020358..5023010Cytochrome P450 79A1, putative, expressed
LOC_Os04g09430Os.52963.2.S1_at2/114+5020358..5023010Cytochrome P450 79A1, putative, expressed
LOC_Os04g09450Os.9362.1.S1_at11/114+5039706..5040965hypothetical protein
LOC_Os04g09450OsAffx.3754.1.S1_at9/114+5039706..5040965hypothetical protein
LOC_Os04g09450OsAffx.17847.1.S1_at5/114+5039706..5040965hypothetical protein
LOC_Os04g09450Os.53286.1.S1_s_at1/114+5039706..5040965hypothetical protein
LOC_Os04g09460OsAffx.9532.1.S1_at5/114+5044791..5049783hypothetical protein
LOC_Os04g09460OsAffx.9532.1.S1_x_at2/114+5044791..5049783hypothetical protein
LOC_Os04g09460OsAffx.20947.1.S1_x_at1/114+5044791..5049783hypothetical protein
LOC_Os04g09460OsAffx.9652.1.S1_x_at1/114+5044791..5049783hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006569biological_processtryptophan catabolism
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0010120biological_processcamalexin biosynthesis
GO:0019761biological_processglucosinolate biosynthesis
GO:0009507cellular_componentchloroplast
GO:0016709molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD or NADH as one donor, and incorporation of one atom of oxygen
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18266.1.S1_at--395--3292Chr04:4858342..4858366 (25 bp)
CAAAGATTCTTTGCTTGGCTGCTGT
NONE
Os.18266.1.S1_at--714--3672Chr04:4858350..4858374 (25 bp)
CTTTGCTTGGCTGCTGTACTACAAT
NONE
Os.18266.1.S1_at--818--9591NONE
TCATTCTCGCTAGCAGTTGGAGCAG
NONE
Os.18266.1.S1_at--569--10372Chr04:4858544..4858567 (24 bp)
TTTTCAGCCGCTGTATCAGGGAACA
NONE
Os.18266.1.S1_at--113--9751NONE
TAATTGAAACTAGTGCGGGCAGTCG
NONE
Os.18266.1.S1_at--137--5271NONE
GAATGGGCCGGATGAGCAACCCAAA
NONE
Os.18266.1.S1_at--806--1012Chr04:4858627..4858651 (25 bp)
AGGTATCCGATCTAATTCATCTTTG
NONE
Os.18266.1.S1_at--597--6011Chr04:5020490..5020514 (25 bp)
GAGATGATCATGTTCCAGATGGCAG
LOC_Os04g09430
Os.18266.1.S1_at--105--10291NONE
TTTCAACCCGAAGATTTGCCGAGAT
NONE
Os.18266.1.S1_at--296--6011NONE
GAGAGAAATCCCTGTCAACCTGTTT
NONE
Os.18266.1.S1_at--451--8994Chr04:4858859..4858883 (25 bp)
TGAATAACTAGTGGCCTATTTGCTG
NONE
Target Sequence 
CAAAGATTCTTTGCTTGGCTGCTGTACTACAATNGGCTATGGATTTNAGAGTGACTACAAAGTCGAGGATGNCCGAACAA
GAACTATTGTGTTTGATATTTATGTTTTGGNACATGGGGACGATGCAACACCTTTTGAAAGATTTNTCATTCTCGCTAGC
AGTTGGAGCAGGGATTTGGCAAAAGAATTGGGCAGAATTTTTTTTCAGCCGCTGTATCAGGGAACAGATCCCTAATTGAA
ACTAGTGCGGGCAGTCGAATGGGCCGGATGAGCAACCCAAAGAAAAGGTATCCGATCTAATTCATCTTTGTGTTGTGGGA
TATTTGGAAAGAGGGAAACAGATCGATTGGTTTTCAAAAGCAGGGTAATCAACAAGATAACGGAAGAGATGATCATGTTC
CAGATGGCAGTAGATCTGTGAAGGGTGTAGTGAGAATATTTCAACCCGAAGATTTGCCGAGATGGGCGGCAAGATTTTAG
AGAGAAATCCCTGTCAACCTGTTTTCATTGTTTTTATTGAATAACTAGTGGCCTATTTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis