Browse Element(s) Details


OsAffx.3754.1.S1_at

Description tigr:9632.m00814
TID=OsAffx.3754.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g094509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09420NANA4+5014585..5015069hypothetical protein
LOC_Os04g09430Os.18266.1.S1_at5/114+5020358..5023010Cytochrome P450 79A1, putative, expressed
LOC_Os04g09430Os.52963.2.S1_at2/114+5020358..5023010Cytochrome P450 79A1, putative, expressed
LOC_Os04g09450Os.9362.1.S1_at11/114+5039706..5040965hypothetical protein
LOC_Os04g09450OsAffx.3754.1.S1_at9/114+5039706..5040965hypothetical protein
LOC_Os04g09450OsAffx.17847.1.S1_at5/114+5039706..5040965hypothetical protein
LOC_Os04g09450Os.53286.1.S1_s_at1/114+5039706..5040965hypothetical protein
LOC_Os04g09460OsAffx.9532.1.S1_at5/114+5044791..5049783hypothetical protein
LOC_Os04g09460OsAffx.9532.1.S1_x_at2/114+5044791..5049783hypothetical protein
LOC_Os04g09460OsAffx.20947.1.S1_x_at1/114+5044791..5049783hypothetical protein
LOC_Os04g09460OsAffx.9652.1.S1_x_at1/114+5044791..5049783hypothetical protein
LOC_Os04g09470OsAffx.22699.1.S1_x_at1/114+5050590..5056287retrotransposon protein, putative, unclassified
LOC_Os04g09480Os.27691.1.S1_x_at3/114+5059343..5063896retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09490Os.27691.1.S1_x_at1/114+5064152..5065304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09490Os.27691.2.S1_x_at1/114+5064152..5065304retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3754.1.S1_at--700--10552Chr12:24115429..24115454 (25 bp)
TTCTTGGCTTATCTAACTCTGGATC
NONE
OsAffx.3754.1.S1_at--96--3612Chr12:24115431..24115456 (25 bp)
CTTGGCTTATCTAACTCTGGATCTC
NONE
OsAffx.3754.1.S1_at--1107--10852Chr12:24115432..24115457 (25 bp)
TTGGCTTATCTAACTCTGGATCTCT
NONE
OsAffx.3754.1.S1_at--603--8492Chr12:24115433..24115458 (25 bp)
TGGCTTATCTAACTCTGGATCTCTG
NONE
OsAffx.3754.1.S1_at--77--3851NONE
CTGCATGCTGACGAGCGCTCGTGTC
NONE
OsAffx.3754.1.S1_at--246--4991NONE
GCATGCTGACGAGCGCTCGTGTCCG
NONE
OsAffx.3754.1.S1_at--267--3951Chr04:5039812..5039836 (25 bp)
CGGCAGGGACATGCGAGCAGCAAGC
LOC_Os04g09450
OsAffx.3754.1.S1_at--739--1071Chr04:5039808..5039832 (25 bp)
AGGGACATGCGAGCAGCAAGCGGCG
LOC_Os04g09450
OsAffx.3754.1.S1_at--476--3491Chr04:5039777..5039801 (25 bp)
CAGGCAGCAGGCATGAAGCAACAGG
LOC_Os04g09450
OsAffx.3754.1.S1_at--451--1531Chr04:5039772..5039796 (25 bp)
AGCAGGCATGAAGCAACAGGCGGAA
LOC_Os04g09450
OsAffx.3754.1.S1_at--337--4991Chr04:5039767..5039791 (25 bp)
GCATGAAGCAACAGGCGGAAGGCAA
LOC_Os04g09450
Target Sequence 
TTCTTGGCTTATCTAACTCTGGATCTCTGCATGCTGACGAGCGCTCGTGTCCGGCGGCGCGGCTACGCGGCAGGGACATG
CGAGCAGCAAGCGGCGAGGCAGCAGGCAGCAGGCATGAAGCAACAGGCGGAAGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis