Browse Element(s) Details


Os.9362.1.S1_at

Description gb:AU091794
DB_XREF= gi:8404440
DB_XREF=AU091794
CLONE=C53561
TID=Os.9362.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.9362 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0945011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09420NANA4+5014585..5015069hypothetical protein
LOC_Os04g09430Os.18266.1.S1_at5/114+5020358..5023010Cytochrome P450 79A1, putative, expressed
LOC_Os04g09430Os.52963.2.S1_at2/114+5020358..5023010Cytochrome P450 79A1, putative, expressed
LOC_Os04g09450Os.9362.1.S1_at11/114+5039706..5040965hypothetical protein
LOC_Os04g09450OsAffx.3754.1.S1_at9/114+5039706..5040965hypothetical protein
LOC_Os04g09450OsAffx.17847.1.S1_at5/114+5039706..5040965hypothetical protein
LOC_Os04g09450Os.53286.1.S1_s_at1/114+5039706..5040965hypothetical protein
LOC_Os04g09460OsAffx.9532.1.S1_at5/114+5044791..5049783hypothetical protein
LOC_Os04g09460OsAffx.9532.1.S1_x_at2/114+5044791..5049783hypothetical protein
LOC_Os04g09460OsAffx.20947.1.S1_x_at1/114+5044791..5049783hypothetical protein
LOC_Os04g09460OsAffx.9652.1.S1_x_at1/114+5044791..5049783hypothetical protein
LOC_Os04g09470OsAffx.22699.1.S1_x_at1/114+5050590..5056287retrotransposon protein, putative, unclassified
LOC_Os04g09480Os.27691.1.S1_x_at3/114+5059343..5063896retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09490Os.27691.1.S1_x_at1/114+5064152..5065304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09490Os.27691.2.S1_x_at1/114+5064152..5065304retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9362.1.S1_at--550--3451Chr04:5040928..5040952 (25 bp)
CAGTAGCCTGTCTAGGTCTGTTCTT
LOC_Os04g09450
Os.9362.1.S1_at--669--4471Chr04:5040923..5040947 (25 bp)
GCCTGTCTAGGTCTGTTCTTTTTTC
LOC_Os04g09450
Os.9362.1.S1_at--521--6731Chr04:5040909..5040933 (25 bp)
GTTCTTTTTTCCTATCATCTCTTCT
LOC_Os04g09450
Os.9362.1.S1_at--863--9551Chr04:5040907..5040931 (25 bp)
TCTTTTTTCCTATCATCTCTTCTTT
LOC_Os04g09450
Os.9362.1.S1_at--270--10372Chr11:25062723..25062858 (25 bp)
TTTTTTCCTATCATCTCTTCTTTTT
NONE
Os.9362.1.S1_at--755--3612Chr09:13470140..13470164 (25 bp)
CTTGTAATTTGTAACCTGTAATGTA
NONE
Os.9362.1.S1_at--441--7032Chr09:13470150..13470174 (25 bp)
GTAACCTGTAATGTAGTAGTACCAA
NONE
Os.9362.1.S1_at--685--6931Chr04:5040833..5040857 (25 bp)
GTAGTAGTACCAACCATCGAGGGCT
LOC_Os04g09450
Os.9362.1.S1_at--781--6931Chr04:5040830..5040854 (25 bp)
GTAGTACCAACCATCGAGGGCTGGA
LOC_Os04g09450
Os.9362.1.S1_at--1136--6871Chr04:5040827..5040851 (25 bp)
GTACCAACCATCGAGGGCTGGACTG
LOC_Os04g09450
Os.9362.1.S1_at--218--1711Chr04:5040825..5040849 (25 bp)
ACCAACCATCGAGGGCTGGACTGGA
LOC_Os04g09450
Target Sequence 
CAGTAGCCTGTCTAGGTCTGTTCTTTTTTCCTATCATCTCTTCTTTTTTAAAAAAAAATGNAAAGGGCAAAGACTTGTAA
TTTGTAACCTGTAATGTAGTAGTACCAACCATCGAGGGCTGGACTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis