Browse Element(s) Details


Os.18269.1.S2_at

Description gb:AK068649.1
DB_XREF= gi:32978666
TID=Os.18269.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158I20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158I20, full insert sequence.
FL= gb:AK068649.1 gb:AK063046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3220011/11thioesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32160Os.8647.1.S1_at11/112+18988145..18995211Copine family protein, expressed
LOC_Os02g32170OsAffx.30613.3.S1_x_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32170OsAffx.30613.3.S1_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32170OsAffx.30613.1.S1_x_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32180OsAffx.12316.1.S1_at10/112+19002248..19006431hypothetical protein
LOC_Os02g32190OsAffx.24531.1.S1_at11/112+19010914..19014434hypothetical protein
LOC_Os02g32200Os.18269.1.S2_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32200Os.18269.1.S1_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32210Os.55268.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210OsAffx.24532.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57515.1.A1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57189.1.S1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32220Os.54381.1.S1_at2/112+19028471..19029896retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g32230Os.33351.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32230Os.54015.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32240NANA2+19035360..19035665hypothetical protein
LOC_Os02g32250Os.46107.1.S2_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_x_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S1_s_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_a_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016291molecular_functionacyl-CoA thioesterase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18269.1.S2_at--1135--5171Chr02:19018253..19018277 (25 bp)
GCAAGTGTGTATGACATTTTTTCTT
LOC_Os02g32200
Os.18269.1.S2_at--516--3671Chr02:19018281..19018305 (25 bp)
CTTTTTTCACTCTTATGTTGTATGT
LOC_Os02g32200
Os.18269.1.S2_at--447--2892Chr02:19018306..19018330 (25 bp)
AAGGGTATATTAGGCATTTCATGAC
LOC_Os02g32200
Os.18269.1.S2_at--485--1311Chr02:19018350..19018374 (25 bp)
AGATGGCATGCCTATGTGGTGTTTT
LOC_Os02g32200
Os.18269.1.S2_at--339--4451Chr02:19018359..19018383 (25 bp)
GCCTATGTGGTGTTTTTGGGTCCAA
LOC_Os02g32200
Os.18269.1.S2_at--477--7791Chr02:19018377..19018401 (25 bp)
GGTCCAAGGACCATAGTATACTGAA
LOC_Os02g32200
Os.18269.1.S2_at--962--5631Chr02:19018407..19018431 (25 bp)
GACTTTGAGGACCAATTTGAACCAA
LOC_Os02g32200
Os.18269.1.S2_at--305--8091Chr02:19018444..19018468 (25 bp)
GGACCATATTGACCTCAGAGCGAAA
LOC_Os02g32200
Os.18269.1.S2_at--989--10491Chr02:19018470..19018494 (25 bp)
TTGAAGGGCCAAATAGGCTATTATC
LOC_Os02g32200
Os.18269.1.S2_at--960--8291Chr02:19018485..19018509 (25 bp)
GGCTATTATCCCAAATTACAACTTG
LOC_Os02g32200
Os.18269.1.S2_at--193--5571Chr02:19018755..19018779 (25 bp)
GAAAGCATGTATGTTGCGGATTGAA
LOC_Os02g32200
Target Sequence 
GCAAGTGTGTATGACATTTTTTCTTTTTCTTTTTTCACTCTTATGTTGTATGTAAGGGTATATTAGGCATTTCATGACAG
ATTTGTATAAGATGATGAGATGGCATGCCTATGTGGTGTTTTTGGGTCCAAGGACCATAGTATACTGAAAAATAGACTTT
GAGGACCAATTTGAACCAATTAAAATATCAAGGACCATATTGACCTCAGAGCGAAAGTTGAAGGGCCAAATAGGCTATTA
TCCCAAATTACAACTTGTAATTTGAAACTTTCAACTCAAAATTTGAAAAACTTTCAATTTAAATTGGAAAACTTTCAAGT
CAAGATTTTAAAACTTTCAACTCAAAATTTGAAAACTTTCAATTTAACTTGGAAAACTTTCAAGTTAATATTTGAAAACT
TTCAATTTAAATTTAAAAACTTTCAACTCAAATTTGAAAATTTTCAATTTGGATTGGAAAACTTTCAAGTCAAGATTTGA
AAACTTTCAACTAAAAAAATTTGAAAGCATGTATGTTGCGGATTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18269.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis