Browse Element(s) Details


Os.18279.1.S1_at

Description gb:AK071148.1
DB_XREF= gi:32981171
TID=Os.18279.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18279 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081M19, full insert sequence.
FL= gb:AK071148.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5735011/11EH-domain containing protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57300Os.38230.1.S1_at11/114+33895065..33897846phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os04g57310Os.15283.1.S1_at11/114+33900474..33904540Uncharacterized conserved protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_s_at10/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_at9/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.3.S1_x_at6/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57330Os.13987.1.S1_at11/114+33908934..33912073expressed protein
LOC_Os04g57340NANA4+33914656..33915517AP2 domain containing protein, expressed
LOC_Os04g57350Os.18279.1.S1_at11/114+33919168..33923078EH-domain containing protein 1, putative, expressed
LOC_Os04g57360Os.54317.1.S1_at11/114+33923478..33926185expressed protein
LOC_Os04g57360OsAffx.26645.1.S1_at10/114+33923478..33926185expressed protein
LOC_Os04g57370Os.22450.1.S1_at11/114+33929122..33931657Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57380Os.57028.1.S1_at11/114+33931853..33933371Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57390OsAffx.14457.1.S1_at11/114+33934285..33935850Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57400Os.5851.1.S1_at11/114+33936430..339396275-methylthioribose kinase family protein, expressed
LOC_Os04g57410Os.5851.1.S1_at4/114+33942669..339453015-methylthioribose kinase family protein
LOC_Os04g57420Os.48312.1.S1_at11/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_at1/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_x_at1/114+33947430..33950345Reticulon family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18279.1.S1_at--548--2671Chr04:33922507..33922531 (25 bp)
AAGCGTTCGAGGTCAGCCAAGGTCC
LOC_Os04g57350
Os.18279.1.S1_at--155--1031Chr04:33922526..33922550 (25 bp)
AGGTCCATGCTCACATAATCAGCCA
LOC_Os04g57350
Os.18279.1.S1_at--503--9651Chr04:33922638..33922662 (25 bp)
TCAGAAGGAGCTGCACTTGCCGGCC
LOC_Os04g57350
Os.18279.1.S1_at--159--4591Chr04:33922664..33922688 (25 bp)
GCGACTTCCCCAGCGTGGATGAGTA
LOC_Os04g57350
Os.18279.1.S1_at--1076--7631Chr04:33922691..33922715 (25 bp)
GGGAGACACTGAGCGCCTACAACTT
LOC_Os04g57350
Os.18279.1.S1_at--1079--2711Chr04:33922795..33922819 (25 bp)
AAGAGCTTCAGGAACCCCTACGAAT
LOC_Os04g57350
Os.18279.1.S1_at--374--2951Chr04:33922846..33922870 (25 bp)
AAGGCGTGTTCGACCACAATACAAG
LOC_Os04g57350
Os.18279.1.S1_at--849--1531Chr04:33922869..33922893 (25 bp)
AGCATGGATCTTTCTTGTTCACAAA
LOC_Os04g57350
Os.18279.1.S1_at--738--5251Chr04:33922911..33922935 (25 bp)
GAATCGTCAATCCATCTCTTTTGTG
LOC_Os04g57350
Os.18279.1.S1_at--61--10831Chr04:33922931..33922955 (25 bp)
TTGTGCTCCACGAAGGCGCGATATA
LOC_Os04g57350
Os.18279.1.S1_at--976--8471Chr04:33922967..33922991 (25 bp)
TGGCGATTTTCTTCAGTCTTCTGCA
LOC_Os04g57350
Target Sequence 
AAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAATCAGCCACCTGAAGAAGGAGATGCCGGCGCTGATGGGCAAGGC
CAAGGCGCAGCAGCGGCTGCTCGACACCCTCGACGAGCAGTTCGCCAANGTTCAGAAGGAGCTGCACTTGCCGGCCGGCG
ACTTCCCCAGCGTGGATGAGTACAGGGAGACACTGAGCGCCTACAACTTCGACAAGTTCGAGAGGCTGAAGCCCAAGCTG
GTGCAGGGCGTCGACGACATGCTCGCCTACGACATCCCCGATCTCCTCAAGAGCTTCAGGAACCCCTACGAATGAATGAG
CAAGCAGCAGCAGTCAGAGAAGGCGTGTTCGACCACAATACAAGCATGGATCTTTCTTGTTCACAAAAAAAGNATGTGAT
CCGTGAATCGTCAATCCATCTCTTTTGTGCTCCACGAAGGCGCGATATATGGCTTTTTGTTGGCGATTTTCTTCAGTCTT
CTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis