Browse Element(s) Details


Os.18328.1.S1_s_at

Description gb:C99253
DB_XREF= gi:3762005
DB_XREF=C99253
CLONE=E10533_6Z
TID=Os.18328.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18328 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0238011/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02350OsAffx.28988.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350Os.16539.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.21992.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.30172.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350Os.20190.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02360Os.47354.1.A1_at11/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02360OsAffx.9177.1.S1_x_at1/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02360Os.40400.1.S1_at1/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02370Os.27951.1.S1_at11/118+934508..938062galactosyltransferase family protein, putative, expressed
LOC_Os08g02380Os.18328.1.S1_s_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02380OsAffx.16789.1.S1_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02390Os.27914.1.S1_at11/118+947342..949799RNA recognition motif family protein, expressed
LOC_Os08g02400OsAffx.16790.1.S1_s_at11/118+950035..95232240S ribosomal protein S13, putative, expressed
LOC_Os08g02410Os.15168.1.S1_at11/118+956242..95818840S ribosomal protein S13, putative, expressed
LOC_Os08g02420Os.8701.1.S1_at11/118+962973..963903EF hand family protein, expressed
LOC_Os08g02430OsAffx.16791.1.S1_at11/118+964591..965055hypothetical protein
LOC_Os08g02440Os.52478.1.S1_at11/118+967944..972565leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18328.1.S1_s_at--186--5351Chr08:945960..945984 (25 bp)
GAAGACGAGATACAAGGTCACACAT
LOC_Os08g02380
Os.18328.1.S1_s_at--1033--5571Chr08:946040..946064 (25 bp)
GAAATGCTAATGTCATCGATCGAAC
LOC_Os08g02380
Os.18328.1.S1_s_at--461--8731Chr08:946050..946074 (25 bp)
TGTCATCGATCGAACTTCTCACTTG
LOC_Os08g02380
Os.18328.1.S1_s_at--36--10591Chr08:946065..946089 (25 bp)
TTCTCACTTGCCTTTATCGCTGTGA
LOC_Os08g02380
Os.18328.1.S1_s_at--443--9191Chr08:946073..946097 (25 bp)
TGCCTTTATCGCTGTGATAGTACAC
LOC_Os08g02380
Os.18328.1.S1_s_at--74--5291Chr08:946099..946123 (25 bp)
GAAGGAACATTGACATCGAGCTGGA
LOC_Os08g02380
Os.18328.1.S1_s_at--290--3551Chr08:946112..946136 (25 bp)
CATCGAGCTGGAAGTTTTGTCATTT
LOC_Os08g02380
Os.18328.1.S1_s_at--269--7431Chr08:946148..946172 (25 bp)
GTGTTTGAGTGGCTAATGTCACCGA
LOC_Os08g02380
Os.18328.1.S1_s_at--423--9771Chr08:946161..946185 (25 bp)
TAATGTCACCGATCGAACTTCTCAC
LOC_Os08g02380
Os.18328.1.S1_s_at--1000--6371Chr08:946171..946195 (25 bp)
GATCGAACTTCTCACTTGCCTTCAT
LOC_Os08g02380
Os.18328.1.S1_s_at--1140--9671Chr08:946182..946206 (25 bp)
TCACTTGCCTTCATCGTTGTTATAG
LOC_Os08g02380
Target Sequence 
GAAGACGAGATACAAGGTCACACATAATACATTTTGNTGCCATTTCTGACGTGNGATACANTGACGGTAGGAACTAGGAA
GAAATGCTAATGTCATCGATCGAACTTCTCACTTGCCTTTATCGCTGTGATAGTACACAGAAGGAACATTGACATCGAGC
TGGAAGTTTTGTCATTTCGAGAATACNCGTGTTTGAGTGGCTAATGTCACCGATCGAACTTCTCACTTGCCTTCATCGTT
GTTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18328.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis