Browse Element(s) Details


Os.18337.1.S1_s_at

Description gb:AK107407.1
DB_XREF= gi:32992616
TID=Os.18337.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18337 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsNAC4-like protein (B1109A06.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-E05, full insert sequence.
FL= gb:AK107407.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2984011/11no apical meristem, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29800Os.27490.2.S1_at3/111+17025093..17025710hypothetical protein
LOC_Os01g29800OsAffx.11234.1.S1_x_at1/111+17025093..17025710hypothetical protein
LOC_Os01g29820Os.27455.1.S1_at11/111+17034358..17039085expressed protein
LOC_Os01g29820Os.27455.1.S1_x_at11/111+17034358..17039085expressed protein
LOC_Os01g29820OsAffx.11259.1.S1_at8/111+17034358..17039085expressed protein
LOC_Os01g29820Os.809.1.A1_at6/111+17034358..17039085expressed protein
LOC_Os01g29830Os.52371.1.S1_at11/111+17043536..17046240expressed protein
LOC_Os01g29840Os.18337.1.S1_x_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.1.S1_s_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.2.S1_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.1.S1_at9/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.2.S1_x_at9/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29850NANA1+17053910..17055723hypothetical protein
LOC_Os01g29860OsAffx.11260.1.S1_at10/111+17055989..17057775hypothetical protein
LOC_Os01g29860Os.51201.1.S1_x_at6/111+17055989..17057775hypothetical protein
LOC_Os01g29870OsAffx.23454.1.S1_at10/111+17058510..17060585Multidrug resistance protein 1, putative, expressed
LOC_Os01g29880NANA1+17065927..17067780Zinc knuckle family protein
LOC_Os01g29890OsAffx.23456.1.S1_at11/111+17070047..17070319hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18337.1.S1_s_at--855--3992Chr01:240047..240071 (25 bp)
CGTGCACCGTATAGCAAGGTATAGT
NONE
Os.18337.1.S1_s_at--636--5072Chr01:240050..240074 (25 bp)
GCACCGTATAGCAAGGTATAGTTAC
NONE
Os.18337.1.S1_s_at--526--10012Chr01:240058..240082 (25 bp)
TAGCAAGGTATAGTTACAGGTATAT
NONE
Os.18337.1.S1_s_at--641--6772Chr01:240070..240094 (25 bp)
GTTACAGGTATATACATACAAGATA
NONE
Os.18337.1.S1_s_at--1001--232Chr01:240094..240118 (25 bp)
ATATATAGGTATACATGCATGCGTG
NONE
Os.18337.1.S1_s_at--1144--272Chr01:240098..240122 (25 bp)
ATAGGTATACATGCATGCGTGATAG
NONE
Os.18337.1.S1_s_at--141--7872Chr01:240101..240125 (25 bp)
GGTATACATGCATGCGTGATAGATA
NONE
Os.18337.1.S1_s_at--609--8772Chr01:240132..240156 (25 bp)
TGTATTTGTGCGTGAGCCCAGCTTG
NONE
Os.18337.1.S1_s_at--971--6872Chr01:240133..240157 (25 bp)
GTATTTGTGCGTGAGCCCAGCTTGA
NONE
Os.18337.1.S1_s_at--108--10212Chr01:240134..240158 (25 bp)
TATTTGTGCGTGAGCCCAGCTTGAT
NONE
Os.18337.1.S1_s_at--845--212Chr01:240135..240159 (25 bp)
ATTTGTGCGTGAGCCCAGCTTGATT
NONE
Target Sequence 
CGTGCACCGTATAGCAAGGTATAGTTACAGGTATATACATACAAGATATATATAGGTATACATGCATGCGTGATAGATAA
ATGTGTGTACTGCATGTATTTGTGCGTGAGCCCAGCTTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18337.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis