Browse Element(s) Details


Os.18337.2.S1_at

Description gb:BI802765
DB_XREF= gi:16575469
DB_XREF=H089C04
CLONE=H089C04
TID=Os.18337.2
CNT=12
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18337 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsNAC4-like protein (B1109A06.25), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2984011/11no apical meristem, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29800Os.27490.2.S1_at3/111+17025093..17025710hypothetical protein
LOC_Os01g29800OsAffx.11234.1.S1_x_at1/111+17025093..17025710hypothetical protein
LOC_Os01g29820Os.27455.1.S1_at11/111+17034358..17039085expressed protein
LOC_Os01g29820Os.27455.1.S1_x_at11/111+17034358..17039085expressed protein
LOC_Os01g29820OsAffx.11259.1.S1_at8/111+17034358..17039085expressed protein
LOC_Os01g29820Os.809.1.A1_at6/111+17034358..17039085expressed protein
LOC_Os01g29830Os.52371.1.S1_at11/111+17043536..17046240expressed protein
LOC_Os01g29840Os.18337.1.S1_x_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.1.S1_s_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.2.S1_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.1.S1_at9/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.2.S1_x_at9/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29850NANA1+17053910..17055723hypothetical protein
LOC_Os01g29860OsAffx.11260.1.S1_at10/111+17055989..17057775hypothetical protein
LOC_Os01g29860Os.51201.1.S1_x_at6/111+17055989..17057775hypothetical protein
LOC_Os01g29870OsAffx.23454.1.S1_at10/111+17058510..17060585Multidrug resistance protein 1, putative, expressed
LOC_Os01g29880NANA1+17065927..17067780Zinc knuckle family protein
LOC_Os01g29890OsAffx.23456.1.S1_at11/111+17070047..17070319hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18337.2.S1_at--667--4511Chr01:17048148..17048172 (25 bp)
GCCGACATCTCGTCGGTGGCATGCA
LOC_Os01g29840
Os.18337.2.S1_at--520--4231Chr01:17048147..17048171 (25 bp)
CCGACATCTCGTCGGTGGCATGCAA
LOC_Os01g29840
Os.18337.2.S1_at--120--4111Chr01:17048146..17048170 (25 bp)
CGACATCTCGTCGGTGGCATGCAAC
LOC_Os01g29840
Os.18337.2.S1_at--716--5671Chr01:17048145..17048169 (25 bp)
GACATCTCGTCGGTGGCATGCAACA
LOC_Os01g29840
Os.18337.2.S1_at--661--2091Chr01:17048144..17048168 (25 bp)
ACATCTCGTCGGTGGCATGCAACAT
LOC_Os01g29840
Os.18337.2.S1_at--536--3531Chr01:17048143..17048167 (25 bp)
CATCTCGTCGGTGGCATGCAACATG
LOC_Os01g29840
Os.18337.2.S1_at--1147--451Chr01:17048142..17048166 (25 bp)
ATCTCGTCGGTGGCATGCAACATGG
LOC_Os01g29840
Os.18337.2.S1_at--632--9511Chr01:17048141..17048165 (25 bp)
TCTCGTCGGTGGCATGCAACATGGA
LOC_Os01g29840
Os.18337.2.S1_at--415--3791Chr01:17048140..17048164 (25 bp)
CTCGTCGGTGGCATGCAACATGGAC
LOC_Os01g29840
Os.18337.2.S1_at--1131--9391Chr01:17048139..17048163 (25 bp)
TCGTCGGTGGCATGCAACATGGACG
LOC_Os01g29840
Os.18337.2.S1_at--990--4011Chr01:17048138..17048162 (25 bp)
CGTCGGTGGCATGCAACATGGACGC
LOC_Os01g29840
Target Sequence 
GCCGACATCTCGTCGGTGGCATGCAACATGGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18337.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis