Browse Element(s) Details


Os.18365.1.S1_at

Description gb:AK072640.1
DB_XREF= gi:32982663
TID=Os.18365.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18365 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative flowering-time protein isoform alpha (P0423A12.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133P13, full insert sequence.
FL= gb:AK101422.1 gb:AK066698.1 gb:AK070074.1 gb:AK072640.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7081011/11flowering-time protein isoform alpha, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70760OsAffx.22699.1.S1_x_at2/111+41283204..41286511retrotransposon protein, putative, unclassified
LOC_Os01g70770Os.4698.1.S1_at11/111+41289312..41291089Glutathione S-transferase III, putative, expressed
LOC_Os01g70780Os.15888.1.A1_at11/111+41293537..41297904SVP1-like protein 2, putative, expressed
LOC_Os01g70790Os.11919.1.S1_at11/111+41300236..41301629XYPPX repeat family protein, expressed
LOC_Os01g70800Os.11148.1.S1_at11/111+41305292..41310419Mitochondrial carrier protein, expressed
LOC_Os01g70810Os.18365.1.S1_at11/111+41311305..41319819flowering-time protein isoform alpha, putative, expressed
LOC_Os01g70810Os.18365.1.S2_at11/111+41311305..41319819flowering-time protein isoform alpha, putative, expressed
LOC_Os01g70820Os.37376.2.S1_x_at8/111+41321152..41323981expressed protein
LOC_Os01g70830Os.33625.3.S1_at1/111+41326677..41327733esterase PIR7A, putative, expressed
LOC_Os01g70830Os.33625.5.S1_x_at1/111+41326677..41327733esterase PIR7A, putative, expressed
LOC_Os01g70840Os.33625.3.S1_at11/111+41329283..41330580Esterase PIR7B, putative, expressed
LOC_Os01g70840Os.33625.5.S1_x_at11/111+41329283..41330580Esterase PIR7B, putative, expressed
LOC_Os01g70850Os.33625.4.S1_at11/111+41331154..41332828Esterase PIR7B, putative, expressed
LOC_Os01g70860Os.3417.1.S1_at11/111+41334170..41336091Esterase PIR7A, putative, expressed
LOC_Os01g70870Os.34720.1.S1_at11/111+41338179..41341912Zinc finger, C2H2 type family protein, expressed
LOC_Os01g70870Os.19512.2.S1_x_at2/111+41338179..41341912Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009911biological_processpositive regulation of flower development
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18365.1.S1_at--281--2291Chr01:41318492..41318516 (25 bp)
AAATGTTGTCAGTTCGTTGCCTTCA
LOC_Os01g70810
Os.18365.1.S1_at--1113--10271Chr01:41318540..41318564 (25 bp)
TTTGCCGGCACAGACTCGAACTAAT
LOC_Os01g70810
Os.18365.1.S1_at--873--6291Chr01:41318585..41318609 (25 bp)
GATGATCTCCGTAAATCCGTCAACT
LOC_Os01g70810
Os.18365.1.S1_at--618--9811Chr01:41318680..41318704 (25 bp)
TAACGTCTGATCCTGTTGCAGTGGC
LOC_Os01g70810
Os.18365.1.S1_at--156--4411Chr01:41318717..41318741 (25 bp)
GCCAGCGGTGAACAAACTAGCCCAT
LOC_Os01g70810
Os.18365.1.S1_at--760--6891Chr01:41318769..41318793 (25 bp)
GTATCACATTCTTCGGTGGCTGAAT
LOC_Os01g70810
Os.18365.1.S1_at--961--7531Chr01:41318784..41318808 (25 bp)
GTGGCTGAATCACATGCCTCTTACA
LOC_Os01g70810
Os.18365.1.S1_at--418--10491Chr01:41318804..41318828 (25 bp)
TTACACATCATACACCTGGCAATCT
LOC_Os01g70810
Os.18365.1.S1_at--1078--3011Chr01:41318859..41318883 (25 bp)
AATGCTACACCTGATCGATGGGCTG
LOC_Os01g70810
Os.18365.1.S1_at--727--9011Chr01:41318888..41318912 (25 bp)
TGCACGCACTACTAATTCCTTTAAC
LOC_Os01g70810
Os.18365.1.S1_at--747--7371Chr01:41318937..41318961 (25 bp)
GTGACGTATCCTAACCAGAATGCTT
LOC_Os01g70810
Target Sequence 
AAATGTTGTCAGTTCGTTGCCTTCACAACCTTATGCTTCAGCTTCTGCTTTGCCGGCACAGACTCGAACTAATATGACAT
CTCTCCCCCAGTCGATGATCTCCGTAAATCCGTCAACTCAACATGTTGCTCCTATGAATAATCTTCTGAGCAGAGCCACG
GTACACCAGCACACCCAATCATATGCTTTAACGTCTGATCCTGTTGCAGTGGCGGTCCATCATCAGCCAGCGGTGAACAA
ACTAGCCCATGAGGTTCAGAGCATCTCACACCCTGCTGTATCACATTCTTCGGTGGCTGAATCACATGCCTCTTACACAT
CATACACCTGGCAATCTAGTGTTGCTACCATTGCCGCCACTGGGCGAAATGCTACACCTGATCGATGGGCTGCACCTGCA
CGCACTACTAATTCCTTTAACGCTGCCCCATCAAATTCAAACCATGTGACGTATCCTAACCAGAATGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis