Browse Element(s) Details


Os.18443.1.S1_at

Description gb:AK073119.1
DB_XREF= gi:32983142
TID=Os.18443.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18443 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033001C17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033001C17, full insert sequence.
FL= gb:AK073119.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g473707/11expressed protein
LOC_Os06g466001/11dnaK protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47330Os.8026.1.S1_at11/1111+27916046..27919616ATP-citrate synthase, putative, expressed
LOC_Os11g47339NANA11+27920797..27921526NA
LOC_Os11g47350OsAffx.7440.1.S1_at11/1111+27925261..27928087Glycosyl hydrolase family 3 C terminal domain containing protein
LOC_Os11g47360NANA11+27932743..27935485retrotransposon protein, putative, unclassified
LOC_Os11g47370Os.18443.1.S1_at7/1111+27938905..27941284expressed protein
LOC_Os11g47379NANA11+27942471..27943166NA
LOC_Os11g47390OsAffx.7441.1.S1_at11/1111+27950341..27952587laccase, putative
LOC_Os11g47390OsAffx.29827.1.S1_at1/1111+27950341..27952587laccase, putative
LOC_Os11g47400NANA11+27957191..27958430hypothetical protein
LOC_Os11g47410OsAffx.19419.1.S1_at11/1111+27958965..27960942AT hook motif-containing protein, putative
LOC_Os11g47420Os.31312.5.S1_x_at3/1111+27963991..27967292retrotransposon protein, putative, unclassified
LOC_Os11g47420Os.31312.2.S1_x_at2/1111+27963991..27967292retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0005634cellular_componentnucleus
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18443.1.S1_at--415--4831Chr11:27940478..27940502 (25 bp)
GCTCAAGCCACGAGGGATCTTTCTA
LOC_Os11g47370
Os.18443.1.S1_at--645--6411Chr11:27940493..27940517 (25 bp)
GATCTTTCTAAGTGCATTGTTGACC
LOC_Os11g47370
Os.18443.1.S1_at--729--6651Chr11:27940511..27940535 (25 bp)
GTTGACCACAGGATGGCTGCCAAAT
LOC_Os11g47370
Os.18443.1.S1_at--874--131Chr11:27940537..27940561 (25 bp)
ATTACCCACGCCTGAGCAATATGCT
LOC_Os11g47370
Os.18443.1.S1_at--795--8031Chr11:27941007..27941031 (25 bp)
GGAGTCCCTGCCCAAGAATGTTGAT
LOC_Os11g47370
Os.18443.1.S1_at--231--71Chr11:27941204..27941228 (25 bp)
ATTGCAAGGCACAAGGGTTCTCCAG
LOC_Os11g47370
Os.18443.1.S1_at--1107--7892Chr11:27941219..27941243 (25 bp)
GGTTCTCCAGCAAGAGCGGATTCTA
LOC_Os11g47370
Os.18443.1.S1_at--250--7092Chr11:27941317..27941341 (25 bp)
GTCAAGCCTGACATTTTGTAGCAAT
NONE
Os.18443.1.S1_at--1090--6831Chr11:27941356..27941380 (25 bp)
GTTTCTGCTGACAGTCTTATACGAT
NONE
Os.18443.1.S1_at--435--491Chr11:27941408..27941432 (25 bp)
ATCGGGTGCCTGCATCTTGATAATC
NONE
Os.18443.1.S1_at--34--2851Chr11:27941429..27941453 (25 bp)
AATCCCAGAGGTGCGGTTTTCACTT
NONE
Target Sequence 
GCTCAAGCCACGAGGGATCTTTCTAAGTGCATTGTTGACCACAGGATGGCTGCCAAATCATTACCCACGCCTGAGCAATA
TGCTGTTGAAAGGGAGTGCACTAAAGCCGAACAATGGCTATGGGAGAGGTCACAACTCCAGGAGTCCCTGCCCAAGAATG
TTGATCCTGCCCTTTGGTCCCATGAAATCAACAAAAAAAAAACACGAGTTGGACATGTTTTGTAGAAACATTGCAAGGCA
CAAGGGTTCTCCAGCAAGAGCGGATTCTAGCGGGGTTTCAGATCACATGCATAAAACAGATAGAGGCTAGACATTTCTAG
GATTTCGTAACTGAACAGCGTTGTCAAGCCTGACATTTTGTAGCAATATACAGATGAGCGAGTTTCTGCTGACAGTCTTA
TACGATCCGACTCTGTACCACAGTCAGCCCGCCATCGGGTGCCTGCATCTTGATAATCCCAGAGGTGCGGTTTTCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis