Browse Element(s) Details


Os.18453.1.S1_at

Description gb:AK059689.1
DB_XREF= gi:32969707
TID=Os.18453.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18453 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013102P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-032-A12, full insert sequence.
FL= gb:AK099826.1 gb:AK059689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1956011/11Protein arginine N-methyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19520Os.24942.4.A1_x_at6/119+11679927..11680334hypothetical protein
LOC_Os09g19520Os.24942.4.A1_at2/119+11679927..11680334hypothetical protein
LOC_Os09g19530NANA9+11682894..11689049transposon protein, putative, unclassified
LOC_Os09g19540NANA9+11689688..11692924transposon protein, putative, unclassified
LOC_Os09g19550OsAffx.29925.1.S1_at11/119+11699471..11701661SNARE domain containing protein
LOC_Os09g19560Os.18453.1.S1_at11/119+11701894..11705346Protein arginine N-methyltransferase 1, putative, expressed
LOC_Os09g19560Os.14894.1.A1_at1/119+11701894..11705346Protein arginine N-methyltransferase 1, putative, expressed
LOC_Os09g19570Os.54527.1.S1_at11/119+11706234..11709471expressed protein
LOC_Os09g19570Os.18476.1.S1_at1/119+11706234..11709471expressed protein
LOC_Os09g19580OsAffx.20733.1.A1_x_at1/119+11713232..11714215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19580Os.45173.3.S1_x_at1/119+11713232..11714215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19590NANA9+11716007..11717189hypothetical protein
LOC_Os09g19600OsAffx.21897.5.S1_x_at3/119+11718719..11721661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19610OsAffx.20387.1.S1_x_at1/119+11723396..11726173retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19620NANA9+11726504..11728083retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19630OsAffx.31069.1.S1_x_at1/119+11729926..11732076retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008168molecular_functionmethyltransferase activity
GO:0016274molecular_functionprotein-arginine N-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18453.1.S1_at--887--251Chr09:11702537..11702561 (25 bp)
ATATCCATGCTCTTGTTGCCTATTT
LOC_Os09g19560
Os.18453.1.S1_at--386--5131Chr09:11702342..11702366 (25 bp)
GCAAACTGTTCTGTACCTGGAGGAT
LOC_Os09g19560
Os.18453.1.S1_at--205--8251Chr09:11702284..11702308 (25 bp)
GGCAGTATGACTGTTACACCGAATA
LOC_Os09g19560
Os.18453.1.S1_at--868--51Chr09:11702242..11702266 (25 bp)
ATTGACATTAAGCTCTGCTACGCCC
LOC_Os09g19560
Os.18453.1.S1_at--832--7751Chr09:11702169..11702193 (25 bp)
GGTGATCAATGCGAGCTCAGCTGCC
LOC_Os09g19560
Os.18453.1.S1_at--1148--4751Chr09:11702150..11702174 (25 bp)
GCTGCCCTGCAATCCATTAAATTTT
LOC_Os09g19560
Os.18453.1.S1_at--983--9351Chr09:11702105..11702129 (25 bp)
TCGCAAACTGTGCTTGTTCCCGTGA
LOC_Os09g19560
Os.18453.1.S1_at--292--6711Chr09:11702090..11702114 (25 bp)
GTTCCCGTGATCCTGTATTAACATA
LOC_Os09g19560
Os.18453.1.S1_at--714--2251Chr09:11702028..11702052 (25 bp)
AAATAGATTGAACTGGCCTGCCGAT
LOC_Os09g19560
Os.18453.1.S1_at--517--8431Chr09:11702014..11702038 (25 bp)
GGCCTGCCGATATGAGATTTGCTAT
LOC_Os09g19560
Os.18453.1.S1_at--323--9571Chr09:11701972..11701996 (25 bp)
TCTTGCTGGCTGGTGGTATTGGTAA
LOC_Os09g19560
Target Sequence 
ATATCCATGCTCTTGTTGCCTATTTCAATGTGTNCTTCACCAAATGCCATAAGATGATGGGCTTCTCAACAGGCCCAAGA
TCAAAAGCCACTCACTGGAAGCAAACTGTTCTGTACCTGGAGGATGTACTGACCATCTGTGAGGGGGAAACCATCNACAG
GCAGTATGACTGTTACACCGAATAAAAAGAATCCCCGAGATATTGACATTAAGCTCTGCTACGCCCTAAGTGGGCATAGA
TGCCAAGTGTCAAGAACACAACACTACAAGATGCGGTGATCAATGCGAGCTCAGCTGCCCTGCAATCCATTAAATTTTGG
TTGACCAAGTATCTTGTTTCGCAAACTGTGCTTGTTCCCGTGATCCTGTATTAACATACGTTATTTATGTTCTTTGGGAT
CTAAGCATAAGTAGAAAATAGATTGAACTGGCCTGCCGATATGAGATTTGCTATTTTGCAAAACTATGTTGTCTTGCTGG
CTGGTGGTATTGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis