Browse Element(s) Details


Os.18465.1.S1_at

Description gb:AK072529.1
DB_XREF= gi:32982552
TID=Os.18465.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18465 (NCBI UniGene Cluster)
UG_TITLE=MRNA for phosphatidylinositol synthase
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127H01, full insert sequence.
FL= gb:AK104814.1 gb:AK072529.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0311011/11CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03060Os.51694.1.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.2.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.1.S1_x_at10/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03070Os.10080.1.S1_at10/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03070OsAffx.30891.1.S1_at1/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03080Os.48733.1.A1_at9/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03080Os.48081.1.S1_at1/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03090OsAffx.24079.1.S1_at11/112+1223725..1226826expressed protein
LOC_Os02g03100Os.5272.1.S1_at11/112+1227321..1230217NADP-dependent D-sorbitol-6-phosphate dehydrogenase, putative, expressed
LOC_Os02g03110Os.18465.1.S1_at11/112+1231029..1234484CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os02g03110Os.18465.2.S1_x_at9/112+1231029..1234484CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os02g03120Os.54770.1.S1_at10/112+1237099..1240160Endoglucanase 1 precursor, putative, expressed
LOC_Os02g03130NANA2+1245577..1247286hypothetical protein
LOC_Os02g03140NANA2+1249053..1249268inhibitor I family protein
LOC_Os02g03150NANA2+1250017..1250226inhibitor I family protein
LOC_Os02g03160OsAffx.19542.3.S1_x_at10/112+1252853..1257075retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g03170NANA2+1258361..1258591inhibitor I family protein

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Gene Ontology Classification
GO idTypeName
GO:0006661biological_processphosphatidylinositol biosynthesis
GO:0008654biological_processphospholipid biosynthesis
GO:0016020cellular_componentmembrane
GO:0003881molecular_functionCDP-diacylglycerol-inositol 3-phosphatidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18465.1.S1_at--85--8691Chr02:1231311..1231335 (25 bp)
TGTCCTTGACACTGAGGGAGGGCAT
LOC_Os02g03110
Os.18465.1.S1_at--500--6131Chr02:1231294..1231318 (25 bp)
GAGGGCATGCTGTGCATTAACAGCA
LOC_Os02g03110
Os.18465.1.S1_at--484--2131Chr02:1231230..1231254 (25 bp)
ACAGGGTTTTAGTCAGATTTTGTAT
LOC_Os02g03110
Os.18465.1.S1_at--410--6911Chr02:1231209..1231233 (25 bp)
GTATGTTTCTTTTTACAACAGCGAT
LOC_Os02g03110
Os.18465.1.S1_at--436--2471Chr02:1231193..1231217 (25 bp)
AACAGCGATGAATCAGCGCGATCTT
LOC_Os02g03110
Os.18465.1.S1_at--53--5251Chr02:1231184..1231208 (25 bp)
GAATCAGCGCGATCTTTGTTTCTTT
LOC_Os02g03110
Os.18465.1.S1_at--979--3071Chr02:1231114..1231138 (25 bp)
AATACCATTCTCACCTCTGGAAATT
LOC_Os02g03110
Os.18465.1.S1_at--589--6131Chr02:1231087..1231111 (25 bp)
GAGGGCATGAATCCCATCGTTTAGC
LOC_Os02g03110
Os.18465.1.S1_at--581--5251Chr02:1231079..1231103 (25 bp)
GAATCCCATCGTTTAGCATTTCACT
LOC_Os02g03110
Os.18465.1.S1_at--1060--4931Chr02:1231064..1231088 (25 bp)
GCATTTCACTCCGTTGTAATTTGTT
LOC_Os02g03110
Os.18465.1.S1_at--447--6831Chr02:1231042..1231066 (25 bp)
GTTTACACTAATATTACTCCATGGA
LOC_Os02g03110
Target Sequence 
TGTCCTTGACACTGAGGGAGGGCATGCTGTGCATTAACAGCATGAAAAGAAAAGGAGAGAGATCAGATGTATTTGAGGAA
AACAGGGTTTTAGTCAGATTTTGTATGTTTCTTTTTACAACAGCGATGAATCAGCGCGATCTTTGTTTCTTTATGAGCTT
GATGTTTGTTGACAGTATTTTTAGCTGGTTATTTGTGAATACCATTCTCACCTCTGGAAATTTGGAGGGCATGAATCCCA
TCGTTTAGCATTTCACTCCGTTGTAATTTGTTTACACTAATATTACTCCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis