Browse Element(s) Details


Os.18465.2.S1_x_at

Description gb:AJ238318.1
DB_XREF= gi:13661019
GEN=PIS1
TID=Os.18465.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18465 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for phosphatidylinositol synthase.
PROD=phosphatidylinositol synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g031109/11CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03060Os.51694.1.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.2.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.1.S1_x_at10/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03070Os.10080.1.S1_at10/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03070OsAffx.30891.1.S1_at1/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03080Os.48733.1.A1_at9/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03080Os.48081.1.S1_at1/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03090OsAffx.24079.1.S1_at11/112+1223725..1226826expressed protein
LOC_Os02g03100Os.5272.1.S1_at11/112+1227321..1230217NADP-dependent D-sorbitol-6-phosphate dehydrogenase, putative, expressed
LOC_Os02g03110Os.18465.1.S1_at11/112+1231029..1234484CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os02g03110Os.18465.2.S1_x_at9/112+1231029..1234484CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os02g03120Os.54770.1.S1_at10/112+1237099..1240160Endoglucanase 1 precursor, putative, expressed
LOC_Os02g03130NANA2+1245577..1247286hypothetical protein
LOC_Os02g03140NANA2+1249053..1249268inhibitor I family protein
LOC_Os02g03150NANA2+1250017..1250226inhibitor I family protein
LOC_Os02g03160OsAffx.19542.3.S1_x_at10/112+1252853..1257075retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g03170NANA2+1258361..1258591inhibitor I family protein

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Gene Ontology Classification
GO idTypeName
GO:0006661biological_processphosphatidylinositol biosynthesis
GO:0008654biological_processphospholipid biosynthesis
GO:0016020cellular_componentmembrane
GO:0003881molecular_functionCDP-diacylglycerol-inositol 3-phosphatidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18465.2.S1_x_at--134--2151Chr02:1232745..1232768 (24 bp)
ACAGACCTGGCTTAGTTTTCTTGAT
LOC_Os02g03110
Os.18465.2.S1_x_at--278--2991Chr02:1232428..1232708 (25 bp)
AATGTACAGTTCGTTCCTATCAGGT
LOC_Os02g03110
Os.18465.2.S1_x_at--1097--1731Chr02:1232338..1232362 (25 bp)
ACCATTCATGGCCTTCTGTTGTGTT
LOC_Os02g03110
Os.18465.2.S1_x_at--1023--8671Chr02:1232021..1232343 (25 bp)
TGTGTTGCTTCGGAGGTTCTGTACA
LOC_Os02g03110
Os.18465.2.S1_x_at--223--2071Chr02:1231999..1232023 (25 bp)
ACATAGTTCTTTTTCTGTTCGCCGA
LOC_Os02g03110
Os.18465.2.S1_x_at--710--2971Chr02:1231866..1231887 (22 bp)
AATGTGTGCGGAAACCTTCTGAAGC
LOC_Os02g03110
Os.18465.2.S1_x_at--704--8991Chr02:1231847..1231871 (25 bp)
TGAAGCAAAGTCCTCTCACTGTCTT
LOC_Os02g03110
Os.18465.2.S1_x_at--807--3331NONE
CACTGTCTTCTTTTTCATTTCAACT
NONE
Os.18465.2.S1_x_at--539--1831Chr02:1231457..1231481 (25 bp)
ACGCGTGCGTTGTGTTTGATTTGAA
LOC_Os02g03110
Os.18465.2.S1_x_at--196--10351Chr02:1231397..1231421 (25 bp)
TTTAGCTTGTGTTTGGCATGTCGAA
LOC_Os02g03110
Os.18465.2.S1_x_at--508--151NONE
ATTTTGACATGTCCTCGGACGCGTG
NONE
Target Sequence 
ACAGACCTGGCTTAGTTTTCTTGATGTTGCTTGGGTTGGATATTACAAGCCATTGGTTTCAAATGTACAGTTCGTTCCTA
TCAGGTAAGACTAGCCACAAGGATGTAAAAGACACAGGCAATTGGCTTCTGAAGTTATATTATGGACACCGACCATTCAT
GGCCTTCTGTTGTGTTGCTTCGGAGGTTCTGTACATAGTTCTTTTTCTGTTCGCCGATGAGAAGTCAACAAGCTTGCTTA
ATGTGTGCGGAAACCTTCTGAAGCAAAGTCCTCTCACTGTCTTCTTTTTCATTTCAACTCTAGTTGGTTGGGCGTTGAAA
CAAGTGATCAATGTTATCCAGATGAAATCAGCCGCAGACGCGTGCGTTGTGTTTGATTTGAAGCGCGGCAAGTGAGCAGA
AATGCACAACGATTTCGTTTAGCTTGTGTTTGGCATGTCGAAGAAAATATTCCATGAGGCTTGATGTACCAAGGCTGTAC
AAACCTAATGTAAGATTTTGACATGTCCTCGGACGCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18465.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis