Browse Element(s) Details


Os.18556.1.S1_x_at

Description gb:AK072880.1
DB_XREF= gi:32982903
TID=Os.18556.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18556 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023146D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023146D23, full insert sequence.
FL= gb:AK072880.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6403010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63990NANA3+36104984..36110492transposon protein, putative, Mutator sub-class
LOC_Os03g64010Os.54448.1.S1_s_at11/113+36114179..36118964expressed protein
LOC_Os03g64010Os.54448.1.S1_x_at5/113+36114179..36118964expressed protein
LOC_Os03g64010Os.11066.1.S1_at2/113+36114179..36118964expressed protein
LOC_Os03g64010Os.52532.1.S1_x_at1/113+36114179..36118964expressed protein
LOC_Os03g64020Os.15427.1.S1_at11/113+36119589..36122138expressed protein
LOC_Os03g64030Os.51249.1.S1_at11/113+36123677..36125345expressed protein
LOC_Os03g64030Os.18556.1.S1_x_at10/113+36123677..36125345expressed protein
LOC_Os03g64050Os.15725.1.S1_at11/113+36128251..36129562expressed protein
LOC_Os03g64060OsAffx.25815.1.S1_s_at11/113+36132339..36132822expressed protein
LOC_Os03g64070Os.21276.1.S1_at10/113+36142945..36144143Lysine Decarboxylase, putative, expressed
LOC_Os03g64080Os.9258.1.S1_at11/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g64080OsAffx.8397.1.S1_at1/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18556.1.S1_x_at--850--4971Chr03:36124885..36124909 (25 bp)
GCATCGGCGCTGTCCTCTGGTACCA
LOC_Os03g64030
Os.18556.1.S1_x_at--733--9251NONE
TCCTCATCCAGGTAGGACTAGCATC
NONE
Os.18556.1.S1_x_at--480--8131Chr03:36123989..36124013 (25 bp)
GGACTAGCATCAGGGCTTGGGCAAT
LOC_Os03g64030
Os.18556.1.S1_x_at--602--4351Chr03:36123846..36123870 (25 bp)
CCAGCTTGGACATATGTTGGCTCAA
LOC_Os03g64030
Os.18556.1.S1_x_at--685--6611Chr03:36123831..36123855 (25 bp)
GTTGGCTCAAGCCTATTTGAACTAT
LOC_Os03g64030
Os.18556.1.S1_x_at--664--8971Chr03:36123814..36123838 (25 bp)
TGAACTATGGTACTTCCACGCTCTA
LOC_Os03g64030
Os.18556.1.S1_x_at--806--9531Chr03:36123793..36123817 (25 bp)
TCTAGTCCTCTCTGTGTTGTTTTTC
LOC_Os03g64030
Os.18556.1.S1_x_at--717--1351Chr03:36123748..36123772 (25 bp)
AGAGACTACGCACCTTATGTTCTAC
LOC_Os03g64030
Os.18556.1.S1_x_at--614--4111Chr03:36123740..36123764 (25 bp)
CGCACCTTATGTTCTACTTTTCTTA
LOC_Os03g64030
Os.18556.1.S1_x_at--915--9551Chr03:36123720..36123744 (25 bp)
TCTTATTTAGTTTCATGGACCACTC
LOC_Os03g64030
Os.18556.1.S1_x_at--800--8091Chr03:36123704..36123728 (25 bp)
GGACCACTCATTCTTATGATTATTG
LOC_Os03g64030
Target Sequence 
GCATCGGCGCTGTCCTCTGGTACCAGGGGGAGAGCGACACCGTGCGCTGGGCCGACGCCAACGAGTACGCCCGCCGGATG
GCCATGCTCGTCCGCAACCTGCGCGCCGATCTCGCCATGCCACACCTTCTCCTCATCCAGGTAGGACTAGCATCAGGGCT
TGGGCAATATACTGAAGTAGTAAGGGAAGCTCAGAAAGGGATCAAACTTCGAAACGTGAGATTTGTTGATGCAAAGGGTT
TGCCACTAGAAGATGGCCATCTGCACCTTAGCACCCAAGCGCAAGTCCAGCTTGGACATATGTTGGCTCAAGCCTATTTG
AACTATGGTACTTCCACGCTCTAGTCCTCTCTGTGTTGTTTTTCTTTTATCAGATAAATAGCTAAGAGACTACGCACCTT
ATGTTCTACTTTTCTTATTTAGTTTCATGGACCACTCATTCTTATGATTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18556.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis