Browse Element(s) Details


Os.18588.1.S1_at

Description gb:AK070565.1
DB_XREF= gi:32980589
TID=Os.18588.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18588 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056M07, full insert sequence.
FL= gb:AK070565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0772011/11Choline-phosphate cytidylyltransferase B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07680Os.5129.2.S1_a_at11/112+3995977..4006874Cytochrome P450 97B2, putative, expressed
LOC_Os02g07690OsAffx.24153.1.S1_s_at11/112+4008988..4010133VQ motif family protein, expressed
LOC_Os02g07700Os.55302.1.S1_at11/112+4014560..4015310expressed protein
LOC_Os02g07710OsAffx.2540.1.S1_at9/112+4015960..4023036expressed protein
LOC_Os02g07720Os.18588.1.S1_at11/112+4024688..4028680Choline-phosphate cytidylyltransferase B, putative, expressed
LOC_Os02g07730Os.50559.1.S1_at11/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07730OsAffx.2542.1.S1_at9/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07740Os.22794.1.A1_at11/112+4034219..4038403expressed protein
LOC_Os02g07750Os.7332.1.S1_at11/112+4038442..4042354LEM3 family/CDC50 family protein, expressed
LOC_Os02g07760Os.9838.1.S1_at11/112+4044612..4052271Succinate semialdehyde dehydrogenase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004105molecular_functioncholine-phosphate cytidylyltransferase activity
GO:0004306molecular_functionethanolamine-phosphate cytidylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18588.1.S1_at--62--5191Chr02:4028113..4028231 (25 bp)
GAAGGCTGCCACTCAATGGGAACTG
LOC_Os02g07720
Os.18588.1.S1_at--62--5471Chr02:4028226..4028250 (25 bp)
GAACTGCCATCAAAGAGCGGATCCA
LOC_Os02g07720
Os.18588.1.S1_at--758--8311Chr02:4028256..4028280 (25 bp)
GGCTCAAGGCGCAATCCAGGGATTT
LOC_Os02g07720
Os.18588.1.S1_at--49--7671Chr02:4028274..4028298 (25 bp)
GGGATTTCAGCCTTCTACAGTATGA
LOC_Os02g07720
Os.18588.1.S1_at--528--611Chr02:4028391..4028415 (25 bp)
ATGCGCTGCATGTAGCAGATCTTCA
LOC_Os02g07720
Os.18588.1.S1_at--361--6431Chr02:4028408..4028432 (25 bp)
GATCTTCAATCCTTGGGCATGTCAT
LOC_Os02g07720
Os.18588.1.S1_at--202--1811Chr02:4028435..4028459 (25 bp)
ACCCCTCTCTCTTCAGGAATGGTGA
LOC_Os02g07720
Os.18588.1.S1_at--7--10511Chr02:4028446..4028470 (25 bp)
TTCAGGAATGGTGAACTTGTGCCCC
LOC_Os02g07720
Os.18588.1.S1_at--878--5012Chr02:4028505..4028529 (25 bp)
GCAGGTGTTTTGTTTAGGCTAAGAC
LOC_Os02g07720
Os.18588.1.S1_at--45--7071Chr02:4028535..4028559 (25 bp)
GTAAGCCTGTAAAATCCCCTAGTCG
LOC_Os02g07720
Os.18588.1.S1_at--950--4171Chr02:4028550..4028574 (25 bp)
CCCCTAGTCGATGGCCTGAATGGTT
LOC_Os02g07720
Target Sequence 
GAAGGCTGCCACTCAATGGGAACTGCCATCAAAGAGCGGATCCAAGAGAGGCTCAAGGCGCAATCCAGGGATTTCAGCCT
TCTACAGTATGATGGCGAGGATGTTGACGAGGATGAGGACGACGACGAANATGTCAGAGAATAATGCCANCACTGTGAAT
ATACGTCAAGTATAATATATGTACATGCGCTGCATGTAGCAGATCTTCAATCCTTGGGCATGTCATGCACCCCTCTCTCT
TCAGGAATGGTGAACTTGTGCCCCCCNAGGTTAGATTTTGGTGCTGTGTTGTAGCAATAGCAGGTGTTTTGTTTAGGCTA
AGACGCAAAGTAAGCCTGTAAAATCCCCTAGTCGATGGCCTGAATGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis