Browse Element(s) Details


Os.18612.1.S1_x_at

Description gb:AK067882.1
DB_XREF= gi:32977900
TID=Os.18612.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122N14, full insert sequence.
FL= gb:AK067882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3605011/11transmembrane CLPTM1 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36020OsAffx.14168.1.S1_at11/114+21777251..21778510F-box domain containing protein
LOC_Os04g36030OsAffx.14169.1.S1_at11/114+21778951..21782471AIG1 family protein
LOC_Os04g36030Os.52782.1.S1_at1/114+21778951..21782471AIG1 family protein
LOC_Os04g36040Os.49521.1.S1_at11/114+21783468..21788376POT family protein, expressed
LOC_Os04g36040Os.22928.1.S1_x_at1/114+21783468..21788376POT family protein, expressed
LOC_Os04g36050Os.18612.1.S1_s_at11/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36050Os.18612.1.S1_x_at11/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36050Os.18612.2.S1_at10/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36054Os.17070.1.S1_at11/114+21818847..21824637Auxin response factor 1, putative, expressed
LOC_Os04g36058Os.35511.1.S1_at11/114+21826730..21829677expressed protein
LOC_Os04g36062Os.8117.2.S1_at11/114+21830525..21836758DUF482, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18612.1.S1_x_at--451--9571Chr04:21802757..21802781 (25 bp)
TCTTCTTGATATACCTCTACCAGAG
LOC_Os04g36050
Os.18612.1.S1_x_at--645--4291Chr04:21802744..21802768 (25 bp)
CCTCTACCAGAGATGGGTGTACCCA
LOC_Os04g36050
Os.18612.1.S1_x_at--543--7751Chr04:21802729..21802753 (25 bp)
GGTGTACCCAGTTGACAAGAAGCGT
LOC_Os04g36050
Os.18612.1.S1_x_at--1002--4651Chr04:21802708..21802732 (25 bp)
GCGTGTCAACGAGTACGGCTTCGGT
LOC_Os04g36050
Os.18612.1.S1_x_at--876--3291Chr04:21802670..21802694 (25 bp)
CACAAGCTCCCCAGACATTGGAAGG
LOC_Os04g36050
Os.18612.1.S1_x_at--785--2871Chr04:21802649..21802673 (25 bp)
AAGGGAGCGATCTAGCAGCTGCATC
LOC_Os04g36050
Os.18612.1.S1_x_at--29--2751Chr04:21802578..21802602 (25 bp)
AAGAAGACGAAGTGAGCCCCTCCTG
LOC_Os04g36050
Os.18612.1.S1_x_at--580--6431Chr04:21802540..21802564 (25 bp)
GATCATCCAACCACAGAACACATCT
LOC_Os04g36050
Os.18612.1.S1_x_at--1006--331Chr04:21802386..21802410 (25 bp)
ATACACTTGCCCAATCTATGGACGG
LOC_Os04g36050
Os.18612.1.S1_x_at--1104--2391Chr04:21802350..21802374 (25 bp)
AAACATTATCGCCACTATTTCCCAG
LOC_Os04g36050
Os.18612.1.S1_x_at--128--4311Chr04:21802339..21802363 (25 bp)
CCACTATTTCCCAGTTTGTCTTAAT
LOC_Os04g36050
Target Sequence 
TCTTCTTGATATACCTCTACCAGAGATGGGTGTACCCAGTTGACAAGAAGCGTGTCAACGAGTACGGCTTCGGTGGGGAA
GACGAGCCACAAGCTCCCCAGACATTGGAAGGGAGCGATCTAGCAGCTGCATCCCAGCAAGCCGGGGCTGAGGCGGAGGC
CGAGACGAGCACGGAGGACAAGAAGACGAAGTGAGCCCCTCCTGCTCTGCACCTCCAGATCATCCAACCACAGAACACAT
CTCGGCTGCCACCGGGCGTAAATTTTCTGTGCCGAGCTTGGAACGCTGGACTCGCCTCACCCGTCGCTGAATGCTGCTGA
CCATAAGAGATTGTAGTAACAGGCTTTGAGTGGGCGCATCGACGAACACACATACACTTGCCCAATCTATGGACGGGCAA
CATCGTCAAACATTATCGCCACTATTTCCCAGTTTGTCTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18612.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis