Browse Element(s) Details

Os.18614.1.S1_at

Description

gb:AK069264.1
DB_XREF= gi:32979288
TID=Os.18614.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023011B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011B03, full insert sequence.
FL= gb:AK069264.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g20400	11/11	DHHC zinc finger domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g20354	OsAffx.27732.1.S1_s_at	11/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20354	Os.50852.1.S1_at	11/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20354	OsAffx.15515.1.S1_at	10/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20370	Os.12198.1.S1_a_at	11/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	Os.12198.1.S1_at	11/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	Os.12198.2.S1_x_at	10/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	OsAffx.13408.1.S1_at	1/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20380	OsAffx.15516.1.S1_at	9/11	6	+	11703388..11705017	hypothetical protein
LOC_Os06g20380	Os.42235.1.S1_at	1/11	6	+	11703388..11705017	hypothetical protein
LOC_Os06g20390	Os.5637.1.S1_at	10/11	6	+	11711593..11716063	expressed protein
LOC_Os06g20400	Os.18614.1.S1_at	11/11	6	+	11718035..11721859	DHHC zinc finger domain containing protein, expressed
LOC_Os06g20400	OsAffx.15517.1.S1_s_at	11/11	6	+	11718035..11721859	DHHC zinc finger domain containing protein, expressed
LOC_Os06g20400	OsAffx.15517.1.S1_at	10/11	6	+	11718035..11721859	DHHC zinc finger domain containing protein, expressed
LOC_Os06g20410	Os.24334.1.A1_at	11/11	6	+	11724807..11733595	BAH domain containing protein, expressed
LOC_Os06g20420	OsAffx.27734.1.S1_at	11/11	6	+	11733894..11734334	hypothetical protein
LOC_Os06g20430	Os.7081.1.S1_at	11/11	6	+	11736127..11740014	LBP/BPI / CETP family, N-terminal domain containing protein, expressed
LOC_Os06g20440	NA	NA	6	+	11741657..11745430	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g20450	OsAffx.27736.1.S1_at	11/11	6	+	11746557..11746873	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.18614.1.S1_at--1139--1017	2	Chr04:34212010..34212034 (25 bp)	TATACTGTCGGCATTAGTCTTGAGC	NONE
Os.18614.1.S1_at--77--19	1	Chr06:11718510..11718534 (25 bp)	ATTTATTGCCTACAGAGCACGGACA	LOC_Os06g20400
Os.18614.1.S1_at--555--593	1	Chr06:11718435..11718459 (25 bp)	GAGCATCGTCAGTACTTGTTCTGTG	LOC_Os06g20400
Os.18614.1.S1_at--558--279	1	Chr06:11718407..11718431 (25 bp)	AAGATCCTAGTCTGATGCTTCGGTG	LOC_Os06g20400
Os.18614.1.S1_at--54--259	2	Chr04:34212410..34212434 (25 bp)	AACGTGTCATATACTGTTCCATGTG	NONE
Os.18614.1.S1_at--543--255	1	Chr06:11718144..11718168 (25 bp)	AACTGATCTTTTTGGCCAGGCAACT	LOC_Os06g20400
Os.18614.1.S1_at--471--705	1	Chr06:11718119..11718143 (25 bp)	GTAACGGGACACAGCTCACGTATTT	LOC_Os06g20400
Os.18614.1.S1_at--793--189	1	Chr06:11718102..11718126 (25 bp)	ACGTATTTAATATTGCTGCTGCCCT	LOC_Os06g20400
Os.18614.1.S1_at--605--915	2	Chr04:34212534..34212558 (25 bp)	TGCCCTTGTAACCATTTGACCTCAT	NONE
Os.18614.1.S1_at--398--545	1	Chr06:11718066..11718090 (25 bp)	GACCTCATTGTTGTTCCTTACGGAG	LOC_Os06g20400
Os.18614.1.S1_at--1046--191	1	Chr06:11718047..11718071 (25 bp)	ACGGAGTACGGCCTTTCATGAAATC	LOC_Os06g20400

Target Sequence

TATACTGTCGGCATTAGTCTTGAGCNGGAACTATTCTCNCATTGATTTNCAGGATGCAATTTCAGCAGATGNTGAAATAC
AATGTGGTTCAATATATTTATTGCCTACAGAGCACGGACAATCTTGAGGTGCTGATGGTTGAGGCCATAAATTGCTNTAT
CCGTAATTGTGAGCATCGTCAGTACTTGTTCTGTGTGAAAGATCCTAGTCTGATGCTTCGGTGTTGCAGGAGAAATCAAC
GTGAAGATTAAATNTGGCAGNGATTTCAGTGTTGTAAAATGCTTGGACCACATNTGCTTGTNGTTGATCCATTAACNCGG
TTTATAGGAAAAGGAACCCCNCGGCTGTTTTTGTACTATTTACNCACTAAACTANCCTTAAATNGGTAGTAATNNTTGTA
AACGTGTCATATACTGTTCCATGTGTNCTTTCCAGTTTTGCCAGATTTTATGTAATTCATTCAACTGATCTTTTTGGCCA
GGCAACTGTAACGGGACACAGCTCACGTATTTAATATTGCTGCTGCCCTTGTAACCATTTGACCTCATTGTTGTTCCTTA
CGGAGTACGGCCTTTCATGAAATC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis