Browse Element(s) Details


Os.18631.1.S1_at

Description gb:AU031189
DB_XREF= gi:3767079
DB_XREF=AU031189
CLONE=E61119_2Z
TID=Os.18631.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18631 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g235208/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23480NANA12+13273350..13274543retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23490OsAffx.19056.1.S1_at1/1112+13279200..13283186retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23500Os.10731.1.A1_a_at8/1112+13284818..13286316retrotransposon protein, putative, unclassified
LOC_Os12g23500OsAffx.31869.5.S1_x_at3/1112+13284818..13286316retrotransposon protein, putative, unclassified
LOC_Os12g23500Os.38764.1.S1_x_at2/1112+13284818..13286316retrotransposon protein, putative, unclassified
LOC_Os12g23500OsAffx.31869.4.S1_x_at2/1112+13284818..13286316retrotransposon protein, putative, unclassified
LOC_Os12g23500OsAffx.31869.4.S1_at1/1112+13284818..13286316retrotransposon protein, putative, unclassified
LOC_Os12g23500Os.45173.1.S1_x_at1/1112+13284818..13286316retrotransposon protein, putative, unclassified
LOC_Os12g23510OsAffx.31848.1.S1_x_at11/1112+13290225..13291355hypothetical protein
LOC_Os12g23514Os.50549.1.S1_at3/1112+13295709..13296838hypothetical protein
LOC_Os12g23514OsAffx.27496.2.S1_x_at1/1112+13295709..13296838hypothetical protein
LOC_Os12g23514OsAffx.24340.1.S1_at1/1112+13295709..13296838hypothetical protein
LOC_Os12g23520Os.18631.1.S1_at8/1112+13297690..13312897retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g23520Os.50549.1.S1_at5/1112+13297690..13312897retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g23520Os.10731.2.A1_at3/1112+13297690..13312897retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g23520OsAffx.1646.1.S1_x_at1/1112+13297690..13312897retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g23530OsAffx.22722.1.S1_x_at1/1112+13313846..13319168retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23540OsAffx.1647.1.S1_at2/1112+13320318..13324118retrotransposon protein, putative, unclassified
LOC_Os12g23540OsAffx.20565.1.S1_at1/1112+13320318..13324118retrotransposon protein, putative, unclassified
LOC_Os12g23540OsAffx.10496.1.S1_at1/1112+13320318..13324118retrotransposon protein, putative, unclassified
LOC_Os12g23550OsAffx.19784.1.S1_at11/1112+13326014..13327403hypothetical protein
LOC_Os12g23560NANA12+13334361..13335945retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18631.1.S1_at--80--5873Chr12:13297527..13297551 (25 bp)
GAGCCAGAGAAGGTGTGTTTCGATT
NONE
Os.18631.1.S1_at--214--7453Chr12:13297539..13297563 (25 bp)
GTGTGTTTCGATTTGGGAAGAAGAA
NONE
Os.18631.1.S1_at--791--8431NONE
GGCCTTGCTGTCCAGTGAGCAGGCA
NONE
Os.18631.1.S1_at--400--1613Chr12:13300678..13300702 (25 bp)
AGCTGATGGACAACTGCTATTTGTA
LOC_Os12g23520
Os.18631.1.S1_at--1074--8133Chr12:13300685..13300709 (25 bp)
GGACAACTGCTATTTGTATCAGAAT
LOC_Os12g23520
Os.18631.1.S1_at--1155--10793Chr12:13300698..13300722 (25 bp)
TTGTATCAGAATACTGCTATTGTGA
LOC_Os12g23520
Os.18631.1.S1_at--996--4873Chr12:13300713..13300737 (25 bp)
GCTATTGTGATACTGGTACTTGAAG
LOC_Os12g23520
Os.18631.1.S1_at--48--7333Chr12:13300719..13300743 (25 bp)
GTGATACTGGTACTTGAAGGCTACT
LOC_Os12g23520
Os.18631.1.S1_at--1122--9913Chr12:13300723..13300747 (25 bp)
TACTGGTACTTGAAGGCTACTTGAT
LOC_Os12g23520
Os.18631.1.S1_at--613--7813Chr12:13300727..13300751 (25 bp)
GGTACTTGAAGGCTACTTGATGGAT
LOC_Os12g23520
Os.18631.1.S1_at--849--8993Chr12:13300733..13300757 (25 bp)
TGAAGGCTACTTGATGGATGAACAA
LOC_Os12g23520
Target Sequence 
GAGCCAGAGAAGGTGTGTTTCGATTTGGGAAGAAGAAGGCCTTGCTGTCCAGTGAGCAGGCAACCATAAAAAGGGCTAGC
AGAGGTGCTGTAAAAGAAAATCAAGAACCTACAAGAACCATAAAAGAGATGATTTNGTANTGNTTTTNGAACCTCGATAC
ACCTACAAGAACCTTAGTTGCATCTAAGTTATGTAATTATTGCTATGTACTTGAAGANCTCCATTATATCTAAGTTGNAC
ATTTATGTAATAGCTATTTGAGCTGATGGACAACTGCTATTTGTATCAGAATACTGCTATTGTGATACTGGTACTTGAAG
GCTACTTGATGGATGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis